PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0008s0970.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 194aa    MW: 21317.6 Da    PI: 10.2215
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0008s0970.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000164971123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C+ C+ksF++   L  H  +H
  SapurV1A.0008s0970.1.p 49 FSCKTCDKSFPSFQALGGHRASH 71
                            89**********99999998887 PP
2zf-C2H212.40.0004896118123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C++Cg  F+    L  H+r+H
  SapurV1A.0008s0970.1.p  96 HRCSICGLEFPLGQALGGHMRRH 118
                             79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.63E-947118No hitNo description
PfamPF139129.7E-124973IPR007087Zinc finger, C2H2
SMARTSM003550.0844971IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2014976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
PfamPF139122.4E-1095120IPR007087Zinc finger, C2H2
SMARTSM003550.08896118IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.76796123IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MKRDREEAEL ELARYLVLLS KFGKADHEIL TNYRSPPPPP PPAAAGRLFS CKTCDKSFPS  60
FQALGGHRAS HKKSKLMEST GNFSKLPDSP SKPKTHRCSI CGLEFPLGQA LGGHMRRHRA  120
APNNVDTAST ASKDHESVAV TQPPFLPALP VLKRSNSSKR VLSLDLSLAL PMYQNDSELQ  180
MEKVTRPLLK CFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0008s0970.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000297.11e-107PREDICTED: zinc finger protein ZAT11
TrEMBLA0A2I4KKH61e-104A0A2I4KKH6_POPTR; C2H2 family protein
STRINGPOPTR_0001s24250.11e-103(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-33C2H2 family protein