PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0009s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C2H2

Protein Properties

Length: 400aa MW: 44263 Da PI: 10.8641

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0009s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.3e-05	288	310	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y Cp+C+k++ + ++ H+ tH SapurV1A.0009s0030.1.p 288 YICPKCKKVCEVSQTFAAHMLTH 310 89*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.42E-5	277	311	No hit	No description
PROSITE pattern	PS00028	0	290	310	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MANNNFNVSS GSIVHENLSL GSNFAQNHVN GQGRIIPQSL APTIGVQPSN LFVPQRGPGQ 60 IALGRRLSGV RRTQISPLIR ARIHTIVEYL PAEQNQIEAL PLHPASGYTV TEIPRTTGRF 120 LPSPAPGELL LAPNHNNVHL QSLNPNNDVR FQGQPNFPNH NLTMFNQVNH RNAYRPYGPQ 180 TRQMINFMNL DHRNHSHGND DGVVVNPKPL SVYGPAGISR AQNPSPNRGL NQNPETSQLG 240 VDRVRINPRD EARDIPTNQS STSSGNEQKM DLGDGVTHSL PHKKYGPYIC PKCKKVCEVS 300 QTFAAHMLTH YRVENKEQRK RRLAAKNKKK NLHQIHSRGN GLTISPVGTK SKVPLKVYVR 360 RKKAAGGKAE MATSKRVVED KVQEGRGNTV FDEAYGLKW*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MANNNFNVSS GSIVHENLSL GSNFAQNHVN GQGRIIPQSL APTIGVQPSN LFVPQRGPGQ  60
IALGRRLSGV RRTQISPLIR ARIHTIVEYL PAEQNQIEAL PLHPASGYTV TEIPRTTGRF  120
LPSPAPGELL LAPNHNNVHL QSLNPNNDVR FQGQPNFPNH NLTMFNQVNH RNAYRPYGPQ  180
TRQMINFMNL DHRNHSHGND DGVVVNPKPL SVYGPAGISR AQNPSPNRGL NQNPETSQLG  240
VDRVRINPRD EARDIPTNQS STSSGNEQKM DLGDGVTHSL PHKKYGPYIC PKCKKVCEVS  300
QTFAAHMLTH YRVENKEQRK RRLAAKNKKK NLHQIHSRGN GLTISPVGTK SKVPLKVYVR  360
RKKAAGGKAE MATSKRVVED KVQEGRGNTV FDEAYGLKW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	324	330	AKNKKKN

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00264	DAP	Transfer from AT2G15740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0009s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025400.1	0.0	PREDICTED: uncharacterized protein LOC105126279
TrEMBL	B9GYK7	0.0	B9GYK7_POPTR; Uncharacterized protein
STRING	POPTR_0003s21710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF18940	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18490.1	5e-15	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0009s0030.1.p