PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0009s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 665aa    MW: 75042.2 Da    PI: 10.0725
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0009s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.2e-081346337
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                            +W t E++ll++av+++G ++W++Ia ++  +Rt 
  SapurV1A.0009s0090.1.p 13 PWGTLEELLLACAVNRHGIDSWDSIAMEVS-NRTS 46
                            8*****************************.6663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-4546IPR009057Homeodomain-like
SMARTSM007171.8E-41066IPR001005SANT/Myb domain
SuperFamilySSF466895.55E-61074IPR009057Homeodomain-like
PfamPF002493.9E-71360IPR001005SANT/Myb domain
CDDcd001672.03E-41364No hitNo description
Gene3DG3DSA:1.20.920.105.5E-14294422IPR001487Bromodomain
SMARTSM002971.9E-12311420IPR001487Bromodomain
SuperFamilySSF473701.7E-16313422IPR001487Bromodomain
CDDcd043691.88E-12323411No hitNo description
PfamPF004391.9E-10325402IPR001487Bromodomain
PROSITE profilePS5001411.202330401IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MAKQQPQQQP STPWGTLEEL LLACAVNRHG IDSWDSIAME VSNRTSTLSS LTSQNCIDRF  60
DDLKRRFGFT TEQKNDTASL LVDELRKLRV DELRREVHQR DVSIVSLEMK VKRLEEEKSL  120
KDKEKPPDLP KPSPETVAGK SETGEECSDG EERSFNESNS TSQQPQKADA EAKKERNEVP  180
EVKPEPDSIK DDPDPARLGS DPEAEREWSF NGKLEDDDDK KPKKEMKIES VTRVGVLGPD  240
SNELGESVGE SKREEKEKDI KQINNNNNNS DVQSSVSLYL KKKKRRRGSG EGSSSGEEER  300
EGGDDEVSPP TKKLPAVKSE PWLKLLEIIR SHQLGSIFEK RLRSQESERY KKLIRQHMDL  360
QMIQSRLNKG VYSKCYKKLF KDLLILLNNA IVFFRKNSPE NHAAYELRAI VLKEMKEKLK  420
KPKPVAVKPA TEQHSASFSK PNKSTSTMLA CSKHSSIKAL SEGSGKIDDK KDAEIEEKPK  480
ANEKKLEVSI VRIEEKGLKK KTTKERSVSG RRNSRAGNKN GEIRHQYGGN ELSSHDALEI  540
KVDRKESTGR KKQGAASFLK RMKQNSPGRV MENDDDYDTS EDESKESKTV DKKRRKREAD  600
RITRRVTRSS KGRVPGEDSR NIKRGRPPKK QMDSGGGAGK RGREDDDSEV GVGGAGRAKK  660
RSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1279285LKKKKRR
2280285KKKKRR
3280286KKKKRRR
4281286KKKRRR
5591595KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0009s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453671.10.0uncharacterized protein DDB_G0284459
TrEMBLA0A2K2BAG10.0A0A2K2BAG1_POPTR; Uncharacterized protein
STRINGcassava4.1_002976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-28DNA-binding bromodomain-containing protein