PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0009s0760.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 475aa    MW: 53576.7 Da    PI: 7.0131
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0009s0760.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.21.7e-138484711374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lLl+cA++v+ g+ e+a+  L+++s+laspdgd+mqR+a+yft ALa r+++ +++l kal+p+++     see+ +++lf+e+
  SapurV1A.0009s0760.1.p  48 LIHLLLACANHVAVGSVENANISLEHISHLASPDGDTMQRIASYFTAALADRILKGWPGLHKALNPKQEF--LISEEILVQRLFFEL 132
                             689*************************************************************999987..69************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174
                             +P+lk+s++++N+aI ea++ge++vHiiD++  +++QW++Llq+L +Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++
  SapurV1A.0009s0760.1.p 133 CPFLKLSYVITNEAIIEAMAGEKMVHIIDLNSCEPAQWINLLQTLRARPEGPPHLRITGIHE----QKEVLEKMALRLTEEAEKLDI 215
                             **************************************************************....9******************** PP

                    GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll............................................... 214
                             pf+fn+ ++++le+l+le+Lrvk+gEalaV++vlqlh ll                                               
  SapurV1A.0009s0760.1.p 216 PFQFNP-IVSKLENLDLEKLRVKTGEALAVSSVLQLHALLamddemhkrnspsgsnnpssnhsqrvlrmnqnrhtlgewlekdlvnv 301
                             ******.7999**************************************************************************** PP

                    GRAS 215 ..........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                                         s+s++ +  ++L++++slsPk++v++eqe++hn+ +++er+++al++y+alfd+le++++r+s er+kvE++l+g
  SapurV1A.0009s0760.1.p 302 yspspdsafsPLSLSTSPKMGSFLNALRSLSPKLMVITEQESNHNGFTLMERVTKALNFYAALFDCLESTVSRASLERHKVEKMLFG 388
                             *******988444444446778***************************************************************** PP

                    GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             +ei+n++aceg+er+erhe+lekW  rle aGF+++pls++   qa++ll+ ++ dgy+++ee+g+l+++W+drpL+svSaWr
  SapurV1A.0009s0760.1.p 389 EEIKNIIACEGTERKERHEKLEKWILRLELAGFGSIPLSYHGRLQANRLLQSYGYDGYKIKEENGCLLICWQDRPLFSVSAWR 471
                             **********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.91522451IPR005202Transcription factor GRAS
PfamPF035145.8E-13648471IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MVGMVQEGRS SSVTSPHQLF PWMSLSPGIG SPHPWLRELK SEERGLCLIH LLLACANHVA  60
VGSVENANIS LEHISHLASP DGDTMQRIAS YFTAALADRI LKGWPGLHKA LNPKQEFLIS  120
EEILVQRLFF ELCPFLKLSY VITNEAIIEA MAGEKMVHII DLNSCEPAQW INLLQTLRAR  180
PEGPPHLRIT GIHEQKEVLE KMALRLTEEA EKLDIPFQFN PIVSKLENLD LEKLRVKTGE  240
ALAVSSVLQL HALLAMDDEM HKRNSPSGSN NPSSNHSQRV LRMNQNRHTL GEWLEKDLVN  300
VYSPSPDSAF SPLSLSTSPK MGSFLNALRS LSPKLMVITE QESNHNGFTL MERVTKALNF  360
YAALFDCLES TVSRASLERH KVEKMLFGEE IKNIIACEGT ERKERHEKLE KWILRLELAG  420
FGSIPLSYHG RLQANRLLQS YGYDGYKIKE ENGCLLICWQ DRPLFSVSAW RFSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-62314701377Protein SCARECROW
5b3h_D2e-62314701377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0009s0760.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1840730.0AC184073.2 Populus trichocarpa clone Pop1-50D1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303907.30.0scarecrow-like protein 3 isoform X1
RefseqXP_024452145.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2I4KK970.0A0A2I4KK97_POPTR; GRAS family protein
STRINGPOPTR_0003s20100.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]