PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0010s0340.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 358aa    MW: 40718.7 Da    PI: 5.6764
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0010s0340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.9e-28958150
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l  +s
  SapurV1A.0010s0340.1.p  9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 58
                            79********************************************9997 PP
2K-box21.59.5e-091221891178
                   K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                             + ++e+l++e+a+L ++++  ++++R +  + ++  s+ eL++ e++L + l+++ ++K+ ll ++++
  SapurV1A.0010s0340.1.p 122 AITSEELHHEIARLLQQLDLAEEQIRIYEPDPIKFTSMGELESCEKRLVDTLSRVMQRKEYLLSNHLS 189
                             5567999********************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.179161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-30282IPR002100Transcription factor, MADS-box
CDDcd002652.30E-36275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-26323IPR002100Transcription factor, MADS-box
PfamPF003196.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.0E-5125191IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGK  60
KRIEDVLARF VNLPDQEREL AIVFPEQGQH QRDIQNTEYV FRTLQQLRNE SDIALQLSKP  120
TAITSEELHH EIARLLQQLD LAEEQIRIYE PDPIKFTSMG ELESCEKRLV DTLSRVMQRK  180
EYLLSNHLSS FNPSRLEHGM PTSFNNDVVN WLPDAGSNHA EILHDGGAHN HSQIFNAPTS  240
LNALRNLSST MYDSLLQGSH SNAEAHCIRE CPGGDGNFPQ WPPYNPTVLH SNPMSPSLYS  300
QIQHEMVGPN IPDMMPREQV EIPVSSPHIQ VDNEGASYED NKVPRLDDQE HQTIFEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-16158158Myocyte-specific enhancer factor 2B
1tqe_Q4e-16158158Myocyte-specific enhancer factor 2B
1tqe_R4e-16158158Myocyte-specific enhancer factor 2B
1tqe_S4e-16158158Myocyte-specific enhancer factor 2B
3mu6_A3e-16270168Myocyte-specific enhancer factor 2A
3mu6_B3e-16270168Myocyte-specific enhancer factor 2A
3mu6_C3e-16270168Myocyte-specific enhancer factor 2A
3mu6_D3e-16270168Myocyte-specific enhancer factor 2A
5f28_A5e-16178179MEF2C
5f28_B5e-16178179MEF2C
5f28_C5e-16178179MEF2C
5f28_D5e-16178179MEF2C
6c9l_A4e-16158158Myocyte-specific enhancer factor 2B
6c9l_B4e-16158158Myocyte-specific enhancer factor 2B
6c9l_C4e-16158158Myocyte-specific enhancer factor 2B
6c9l_D4e-16158158Myocyte-specific enhancer factor 2B
6c9l_E4e-16158158Myocyte-specific enhancer factor 2B
6c9l_F4e-16158158Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0010s0340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451014.10.0agamous-like MADS-box protein AGL104 isoform X6
SwissprotQ9LM461e-119AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A2K2BG100.0A0A2K2BG10_POPTR; Uncharacterized protein
STRINGPOPTR_0002s09290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-121AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]