PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0012s0460.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 326aa MW: 35696.2 Da PI: 9.5107

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0012s0460.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118	3.6e-37	34	90	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt GG++rnvPvGgg+rk k+ SapurV1A.0012s0460.1.p 34 PQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTLGGTMRNVPVGGGCRKGKRP 90 689**************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-31	35	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.332	35	89	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-23	36	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MQRKMQGGSE DVKPNQERRL KSTQGDNQQP QPPPQKCPRC ESLNTKFCYY NNYSLSQPRY 60 FCKTCRRYWT LGGTMRNVPV GGGCRKGKRP KTSSSSSSGE NSLLQQQPQL LQHNLATPQN 120 ILATTNSGNS LSPPMRTKES GNLVSPPPGM SSMGSYFPGD GFLTSLEAIQ SLKNSQPPLQ 180 SFSFQPLNQP VNLGGDLGDT SNLGLLHGFS AVPAFGSQNQ QQRQFYHADN RDNKSVEHSF 240 YPQYDQERLI QSSRPAATSS HQQQNWHQGY ISNSNPTVSD TVLWSISTST TTGHTSSNIN 300 TGNGGSSSLN PDQWRHDLPG NGPPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0012s0460.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002305784.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	B9H2S7	0.0	B9H2S7_POPTR; Uncharacterized protein
STRING	POPTR_0004s04590.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	5e-32	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	SapurV1A.0012s0460.1.p