PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0012s0710.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 313aa    MW: 35327.3 Da    PI: 7.2113
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0012s0710.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.95.9e-34622021128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                             lp+G++F+Ptd+e++ e+L++kv ++       ++++ + i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++
  SapurV1A.0012s0710.2.p  62 LPAGVKFDPTDQEIL-EHLEAKVLSDMrklhplIDEFITtIEGEnGICYTHPEKLP-GVSNDGQIRHFFHRPSKAYTTGTRKRRKVH 146
                             799***********9.99****998886676553333333766657**********.566667778******************744 PP

                     NAM  80 ......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   + +W++tgk+++v++ +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  SapurV1A.0012s0710.2.p 147 tdedgsETRWHKTGKTRSVFA-GGTVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 202
                             446555788************.99************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3855221IPR003441NAC domain
PROSITE profilePS5100533.94662221IPR003441NAC domain
PfamPF023651.7E-1563202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MTWCNNNSED DGVMIQLVTS NPKEDTFVDA KTDETRRINC PSCGHNFEIQ DQGGIIHDLP  60
GLPAGVKFDP TDQEILEHLE AKVLSDMRKL HPLIDEFITT IEGENGICYT HPEKLPGVSN  120
DGQIRHFFHR PSKAYTTGTR KRRKVHTDED GSETRWHKTG KTRSVFAGGT VKGFKKILVL  180
YTNYGRQRKP EKTNWVMHQY HLGNNEEEKD GELVVSKVFY QTQPRQCNSS MKDSIDNKST  240
NQSGVIDNVH SLDKNSTGLL QYYNSTYITY DHGNHSSEIP PQFLPNVAVQ GDGSSYIRLA  300
ADTSKGKLQR KQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0012s0710.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7700140.0KP770014.1 Populus tomentosa NAC transcription factor (Potri.004G049300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384048.20.0NAC domain-containing protein 73
RefseqXP_024454301.10.0NAC domain-containing protein 73
SwissprotO494591e-121NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0F6S3950.0A0A0F6S395_POPTO; NAC transcription factor
STRINGPOPTR_0004s04900.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-124NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]