PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0013s0150.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 263aa MW: 28787.8 Da PI: 8.9525

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0013s0150.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.2e-39	20	80	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+stntkfCyynnys +qPryfCkaCrryWt+GG+lrnvPvGgg+rknk+s+ SapurV1A.0013s0150.1.p 20 PQEQVNCPRCNSTNTKFCYYNNYSFTQPRYFCKACRRYWTEGGSLRNVPVGGGSRKNKRST 80 6899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	19	78	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.8E-33	22	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	24	78	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	26	62	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MDEMASNSCG RPVPERKARP QEQVNCPRCN STNTKFCYYN NYSFTQPRYF CKACRRYWTE 60 GGSLRNVPVG GGSRKNKRST SSSVAASSSK LPDLNPPSLS HFSSQNPKSI HEGQDLNLAF 120 PAMQDSQGIS HYTEMAKTEY RNNNQHNSSS SPYTSSPISA MELLRSGIDS RGLNPFIPSP 180 MPDSNTLYSS GGFPLQEIKP TLSFSVDGLG SRYGIQENSG RILFPFGELK QHSSTPSEID 240 QNKGQGTSSG YWNGMFGGGS SW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0013s0150.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024451839.1	1e-153	dof zinc finger protein DOF2.5 isoform X5
Refseq	XP_024451840.1	1e-153	dof zinc finger protein DOF2.5 isoform X5
Swissprot	Q43385	2e-72	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A3Q9EDU3	1e-137	A0A3Q9EDU3_POPTO; DOF affecting germination 2
STRING	POPTR_0014s09640.1	1e-149	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-77	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0013s0150.1.p