PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0013s0480.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 323aa    MW: 36821 Da    PI: 6.7811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0013s0480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12186211126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             y   +C+++ +tG+C yGd+CkF+H+
  SapurV1A.0013s0480.1.p 186 YQPDICKDYKETGYCGYGDSCKFMHD 211
                             67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-9184216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878185213IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7185212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12186216IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10186211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.2E-13253302IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139203.7E-9260301No hitNo description
SuperFamilySSF578501.06E-12260303No hitNo description
CDDcd001624.58E-8261302No hitNo description
SMARTSM001844.9E-5261298IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.601261299IPR001841Zinc finger, RING-type
PROSITE patternPS005180276285IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MADSTEPEPQ QTEAVCNFFR KPMKNKNIRK RMIDEDEDED SKTETSLLHS QKKNPKADNK  60
LYFSTGPSKK SSESNAEPER LVFQFESSKE IQVQHDSRAT ATLETETEFS KDARAIRERS  120
LKQADDALKG KKTSSGDEKL YKGIHGYTDH KAGFRREQTI SSEKAGGSHG PLRASAHIRV  180
SARFDYQPDI CKDYKETGYC GYGDSCKFMH DRGDYKSGWQ MEKEWEEAEK ARKRNLALGM  240
DDEEEGGVGH DDDEDELPFA CFICREQFVD PVVTKCKHYF CEHCALKHHA KNKKCFVCNE  300
PTLGIFNSAQ EIRKRMAEAG KR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-658131698317RING finger protein 113A
5z58_M3e-658131698317RING finger protein 113A
6ff4_t3e-658131698317RING finger protein 113A
6ff7_t3e-658131698317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0013s0480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441486.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-176C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2K1XT330.0A0A2K1XT33_POPTR; Uncharacterized protein
STRINGcassava4.1_027613m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-160C3H family protein