PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0013s1020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

WRKY

Protein Properties

Length: 190aa MW: 21272.4 Da PI: 9.9935

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0013s1020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.2	6.9e-33	110	168	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ SapurV1A.0013s1020.1.p 110 LDDGYRWRKYGQKAVKNSKYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGVHNHP 168 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-33	96	168	IPR003657	WRKY domain
SuperFamily	SSF118290	1.14E-28	103	169	IPR003657	WRKY domain
PROSITE profile	PS50811	29.126	105	170	IPR003657	WRKY domain
SMART	SM00774	1.8E-38	110	169	IPR003657	WRKY domain
Pfam	PF03106	3.1E-26	111	168	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MEGQGAPPPP PPPLPQFPSQ NSPYLFTPSL LLSSSLHPSI IEPQGLPDID WVGLLSGQSG 60 LGQNRPIMDN ASMVAENGAE EEKGKKKGGR MKKATRPRFA FQTRSADDIL DDGYRWRKYG 120 QKAVKNSKYP RSYYRCTHHT CNVKKQVQRL SKDTSIVVTT YEGVHNHPCE KMMETLTPLL 180 KQMQFLARF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-24	100	167	7	74	Probable WRKY transcription factor 4
2ayd_A	2e-24	98	167	2	71	WRKY transcription factor 1
2lex_A	2e-24	100	167	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00539	DAP	Transfer from AT5G41570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0013s1020.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ377439	1e-146	GQ377439.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 19 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002320160.2	1e-116	probable WRKY transcription factor 43
Swissprot	Q8GY11	3e-55	WRK43_ARATH; Probable WRKY transcription factor 43
Swissprot	Q9FFS3	1e-54	WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBL	B9I8Q5	1e-114	B9I8Q5_POPTR; Uncharacterized protein
STRING	XP_002511926.1	2e-94	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	1e-55	WRKY DNA-binding protein 43

Link Out ? help Back to Top
Phytozome	SapurV1A.0013s1020.1.p

Publications ? help Back to Top
Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824]