PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0014s0910.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 452aa    MW: 48763.6 Da    PI: 7.9204
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0014s0910.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345e-115075126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                            ++ + C +++rtG C yG++C+++H+
  SapurV1A.0014s0910.1.p 50 PGVPDCGYYLRTGLCGYGSNCRYNHP 75
                            5789*********************8 PP
2zf-CCCH33.85.5e-1194118327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             ++ C ++ +tGtCkyG++Ck++H++
  SapurV1A.0014s0910.1.p  94 QPDCGYYIKTGTCKYGSTCKYHHPR 118
                             789********************96 PP
3zf-CCCH34.82.8e-11140163427
                             ---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                             + C++++rt  Ck+G  CkF+H++
  SapurV1A.0014s0910.1.p 140 KSCPYYMRTRSCKFGVACKFHHPQ 163
                             66********************97 PP
4zf-CCCH34.63.1e-11288313227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++Cr+f+ +GtCkyG+ Ck++H++
  SapurV1A.0014s0910.1.p 288 DQPECRHFMSSGTCKYGSDCKYHHPK 313
                             689*********************96 PP
5zf-CCCH31.14e-10334358226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             +++ C+++  +G+Ck+G++C++ H+
  SapurV1A.0014s0910.1.p 334 GQAVCPDYNMYGICKFGPTCRYDHP 358
                             7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.1414977IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-54976IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-85175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-55476IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-491118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.97691119IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-894118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-696119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-497118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5135164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962136164IPR000571Zinc finger, CCCH-type
SMARTSM003560.029138163IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-4141162IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5286313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.399286314IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9288313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6289315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5292313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5331358IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-7332359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084332360IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7334358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MPDHNNRQVK SNAVSNQSAD NIEEAFWRLK IHDPQEQGGM AQSSPYPDRP GVPDCGYYLR  60
TGLCGYGSNC RYNHPIYAAQ GTQLREELPE RIGQPDCGYY IKTGTCKYGS TCKYHHPRDR  120
NGAGPVSFNV LGLPMRQDEK SCPYYMRTRS CKFGVACKFH HPQPASLGTS LPHTGAGAFG  180
STGSPTVPSS GLPYVGGLPT WSLPRAPYMP GTHLQGPQAY MPVVVSPSQG IVPVPGWNAY  240
MGNLNPMSSP GIMGSNRAYD SRSQGDSGSS GQAHLLSAAI PALPERPDQP ECRHFMSSGT  300
CKYGSDCKYH HPKERIAQLT TNTMGPLGLP LRPGQAVCPD YNMYGICKFG PTCRYDHPLP  360
TYPCNYSLSL PSLSIMDSSM VAYPRTAHAA LSLATPVSLS KLPDLILSPD GSSYNKHQNS  420
DSNTKTLDDP TEHAGSPPPH SSQASSEPSH D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0014s0910.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302855.10.0zinc finger CCCH domain-containing protein 3
TrEMBLB9GTS90.0B9GTS9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s21790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-115C3H family protein