PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0014s0910.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 448aa    MW: 48195.9 Da    PI: 7.7972
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0014s0910.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345e-115075126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                            ++ + C +++rtG C yG++C+++H+
  SapurV1A.0014s0910.2.p 50 PGVPDCGYYLRTGLCGYGSNCRYNHP 75
                            5789*********************8 PP
2zf-CCCH215.9e-07991141227
                             TS--TTTTT-SS-SSS CS
                 zf-CCCH  12 tGtCkyGdrCkFaHgp 27 
                             tGtCkyG++Ck++H++
  SapurV1A.0014s0910.2.p  99 TGTCKYGSTCKYHHPR 114
                             8*************96 PP
3zf-CCCH34.82.8e-11136159427
                             ---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                             + C++++rt  Ck+G  CkF+H++
  SapurV1A.0014s0910.2.p 136 KSCPYYMRTRSCKFGVACKFHHPQ 159
                             66********************97 PP
4zf-CCCH34.73.1e-11284309227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++Cr+f+ +GtCkyG+ Ck++H++
  SapurV1A.0014s0910.2.p 284 DQPECRHFMSSGTCKYGSDCKYHHPK 309
                             689*********************96 PP
5zf-CCCH31.14e-10330354226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             +++ C+++  +G+Ck+G++C++ H+
  SapurV1A.0014s0910.2.p 330 GQAVCPDYNMYGICKFGPTCRYDHP 354
                             7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1414977IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-85175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-55476IPR000571Zinc finger, CCCH-type
SMARTSM003560.8491114IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-499114IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.8599115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5131160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962132160IPR000571Zinc finger, CCCH-type
SMARTSM003560.029134159IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9135159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4137158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.399282310IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5282309IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9284309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6285311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5288309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5327354IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-7328355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084328356IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7330354IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MPDHNNRQVK SNAVSNQSAD NIEEAFWRLK IHDPQEQGGM AQSSPYPDRP GVPDCGYYLR  60
TGLCGYGSNC RYNHPIYAAQ GTQLREELPE RIGQPDCGTG TCKYGSTCKY HHPRDRNGAG  120
PVSFNVLGLP MRQDEKSCPY YMRTRSCKFG VACKFHHPQP ASLGTSLPHT GAGAFGSTGS  180
PTVPSSGLPY VGGLPTWSLP RAPYMPGTHL QGPQAYMPVV VSPSQGIVPV PGWNAYMGNL  240
NPMSSPGIMG SNRAYDSRSQ GDSGSSGQAH LLSAAIPALP ERPDQPECRH FMSSGTCKYG  300
SDCKYHHPKE RIAQLTTNTM GPLGLPLRPG QAVCPDYNMY GICKFGPTCR YDHPLPTYPC  360
NYSLSLPSLS IMDSSMVAYP RTAHAALSLA TPVSLSKLPD LILSPDGSSY NKHQNSDSNT  420
KTLDDPTEHA GSPPPHSSQA SSEPSHD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0014s0910.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302855.10.0zinc finger CCCH domain-containing protein 3
TrEMBLB9GTS90.0B9GTS9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s21790.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-110C3H family protein