PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0014s0910.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 413aa    MW: 44319.8 Da    PI: 8.1351
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0014s0910.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.5e-111136126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                            ++ + C +++rtG C yG++C+++H+
  SapurV1A.0014s0910.3.p 11 PGVPDCGYYLRTGLCGYGSNCRYNHP 36
                            5789*********************8 PP
2zf-CCCH345e-115579327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                            ++ C ++ +tGtCkyG++Ck++H++
  SapurV1A.0014s0910.3.p 55 QPDCGYYIKTGTCKYGSTCKYHHPR 79
                            789********************96 PP
3zf-CCCH352.5e-11101124427
                             ---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                             + C++++rt  Ck+G  CkF+H++
  SapurV1A.0014s0910.3.p 101 KSCPYYMRTRSCKFGVACKFHHPQ 124
                             66********************97 PP
4zf-CCCH34.82.8e-11249274227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             ++++Cr+f+ +GtCkyG+ Ck++H++
  SapurV1A.0014s0910.3.p 249 DQPECRHFMSSGTCKYGSDCKYHHPK 274
                             689*********************96 PP
5zf-CCCH31.33.6e-10295319226
                             -S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                             +++ C+++  +G+Ck+G++C++ H+
  SapurV1A.0014s0910.3.p 295 GQAVCPDYNMYGICKFGPTCRYDHP 319
                             7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-51037IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1411038IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-91236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-51537IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-41635IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-45279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9765280IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-85579IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-65780IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-45879IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-596125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.96297125IPR000571Zinc finger, CCCH-type
SMARTSM003560.02999124IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9100124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-4102123IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-5247274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.399247275IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9249274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-6250276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5253274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5292319IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-7293320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.084293321IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-7295319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAQSSPYPDR PGVPDCGYYL RTGLCGYGSN CRYNHPIYAA QGTQLREELP ERIGQPDCGY  60
YIKTGTCKYG STCKYHHPRD RNGAGPVSFN VLGLPMRQDE KSCPYYMRTR SCKFGVACKF  120
HHPQPASLGT SLPHTGAGAF GSTGSPTVPS SGLPYVGGLP TWSLPRAPYM PGTHLQGPQA  180
YMPVVVSPSQ GIVPVPGWNA YMGNLNPMSS PGIMGSNRAY DSRSQGDSGS SGQAHLLSAA  240
IPALPERPDQ PECRHFMSSG TCKYGSDCKY HHPKERIAQL TTNTMGPLGL PLRPGQAVCP  300
DYNMYGICKF GPTCRYDHPL PTYPCNYSLS LPSLSIMDSS MVAYPRTAHA ALSLATPVSL  360
SKLPDLILSP DGSSYNKHQN SDSNTKTLDD PTEHAGSPPP HSSQASSEPS HD*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0014s0910.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302855.10.0zinc finger CCCH domain-containing protein 3
SwissprotQ94AD91e-109C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLB9GTS90.0B9GTS9_POPTR; Uncharacterized protein
STRINGPOPTR_0002s21790.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-106C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]