PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0014s0910.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

C3H

Protein Properties

Length: 318aa MW: 33831.1 Da PI: 7.9452

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0014s0910.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.8e-11	6	29	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rt Ck+G CkF+H++ SapurV1A.0014s0910.4.p 6 KSCPYYMRTRSCKFGVACKFHHPQ 29 66********************97 PP
2	zf-CCCH	35.3	2e-11	154	179	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ +GtCkyG+ Ck++H++ SapurV1A.0014s0910.4.p 154 DQPECRHFMSSGTCKYGSDCKYHHPK 179 689*********************96 PP
3	zf-CCCH	31.7	2.6e-10	199	224	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++ +G+Ck+G++C++ H+ SapurV1A.0014s0910.4.p 199 PGQAVCPDYNMYGICKFGPTCRYDHP 224 57899********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.962	2	30	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-5	4	30	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.029	4	29	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-9	5	29	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.6E-4	7	28	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-5	152	179	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.399	152	180	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-9	154	179	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	8.9E-7	155	181	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-5	158	179	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.19E-5	197	224	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.084	198	226	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.5E-7	198	225	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-7	200	224	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MRQDEKSCPY YMRTRSCKFG VACKFHHPQP ASLGTSLPHT GAGAFGSTGS PTVPSSGLPY 60 VGGLPTWSLP RAPYMPGTHL QGPQAYMPVV VSPSQGIVPV PGWNAYMGNL NPMSSPGIMG 120 SNRAYDSRSQ GDSGSSGQAH LLSAAIPALP ERPDQPECRH FMSSGTCKYG SDCKYHHPKE 180 RIAQLTTNTM GPLGLPLRPG QAVCPDYNMY GICKFGPTCR YDHPLPTYPC NYSLSLPSLS 240 IMDSSMVAYP RTAHAALSLA TPVSLSKLPD LILSPDGSSY NKHQNSDSNT KTLDDPTEHA 300 GSPPPHSSQA SSEPSHD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0014s0910.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002302855.1	0.0	zinc finger CCCH domain-containing protein 3
TrEMBL	A0A3N7G098	0.0	A0A3N7G098_POPTR; Uncharacterized protein
TrEMBL	B9GTS9	0.0	B9GTS9_POPTR; Uncharacterized protein
STRING	POPTR_0002s21790.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	3e-51	C3H family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0014s0910.4.p