PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0015s0990.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 545aa    MW: 58985.7 Da    PI: 9.9118
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0015s0990.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-057395123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            + C+ C+k F r  nL+ H r H
  SapurV1A.0015s0990.1.p 73 FICEVCNKGFQREQNLQLHRRGH 95
                            89*******************88 PP
2zf-C2H212.60.00041149171123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC++C+k +  +s+ k H +t+
  SapurV1A.0015s0990.1.p 149 WKCEKCSKKYAVQSDWKAHSKTC 171
                             58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-67295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-77295No hitNo description
PfamPF121712.6E-57395IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.997395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355160114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-5137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-7144169No hitNo description
SMARTSM00355140149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MAAASSSSAP FFGRPSREEN ENQMIQQRSS TTTSSTVPTT EPQKKRRNQP GTPNPDAEVI  60
ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEVR KKVYLCPEPA  120
CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AQESARQPPS LSTIGTNLYG NNHMINLGLS RVGSQISQLQ  240
DHHPSGNNML RLGGDGAAKF EHLIPPPNPS SIPMMPSSGF FMGDANQGPF PNKSLQGLMQ  300
LPDLQSNSNN SSASSLFNQL GFFPNNSNTN RVSRNENSNT GSSRLVNSGF LNANPFNNIN  360
GADQGTALFS SNMGGDHVGP GSMSSVFNTS MQNISPYMSA TALLQKAAQM GSTTSSSIPT  420
SLLKGLGSSS TTGAKYVRPH VSTIFGSNFG NPAAGESLET QMESDSHFQG LMNSLANGSS  480
SIFGNEQGNS YTGFNSSDFS KAGEDNLHQN LAGSDKLTLD FLGVGGRVRN IGGGFPRGDQ  540
HRMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35145206364Zinc finger protein JACKDAW
5b3h_F4e-35145206364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199111KLKQKTTKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0015s0990.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2084940.0AC208494.1 Populus trichocarpa clone JGIACSB265-L05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379805.20.0protein indeterminate-domain 5, chloroplastic
SwissprotQ8GYC11e-132IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
SwissprotQ9ZUL31e-131IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A2K1ZH370.0A0A2K1ZH37_POPTR; Uncharacterized protein
STRINGPOPTR_0008s14190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15363397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-115indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]