PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0016s0590.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

WOX

Protein Properties

Length: 192aa MW: 21968.8 Da PI: 5.828

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0016s0590.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.2	9.1e-21	52	112	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ ql++Le+ Fe+ n +p ++++++++++l +++e++V++WFqNrRa+ k+ SapurV1A.0016s0590.3.p 52 RQRWTPKPAQLQILEQIFEQcNATPGRQKIKDITRELaqhgQISETNVYNWFQNRRARSKR 112 89***************99************************************97 PP
2	Wus_type_Homeobox	96	3.1e-31	51	114	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+p Q++iLe+++++ tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq SapurV1A.0016s0590.3.p 51 SRQRWTPKPAQLQILEQIFEQCNATPGRQKIKDITRELAQHGQISETNVYNWFQNRRARSKRKQ 114 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.5E-17	47	116	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.72E-18	47	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.738	48	113	IPR001356	Homeobox domain
SMART	SM00389	2.6E-13	50	117	IPR001356	Homeobox domain
Pfam	PF00046	1.8E-18	52	112	IPR001356	Homeobox domain
CDD	cd00086	5.59E-14	52	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MMNCPINLFG SVRFTWFCGG NCLCFVFDLG MRLGNPYCDP LLSSAVHKIG SRQRWTPKPA 60 QLQILEQIFE QCNATPGRQK IKDITRELAQ HGQISETNVY NWFQNRRARS KRKQSAVVPN 120 NGESEMETEN ESFREKKTRP EDSQPDENTT PLADQMYFNS PDIGFDQLVG KMESPGSCIP 180 YWQMEQYDLL G*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	113	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0016s0590.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY479970	0.0	AY479970.1 Populus tomentosa homeodomain protein HB3 pseudogene mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002301917.1	1e-111	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	2e-44	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	B9GQ01	1e-110	B9GQ01_POPTR; WOX family protein
STRING	POPTR_0002s00980.1	1e-110	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-44	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	SapurV1A.0016s0590.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]