PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0016s0650.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Nin-like
Protein Properties Length: 915aa    MW: 101204 Da    PI: 5.6336
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0016s0650.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.82.5e-29612663152
                  RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  SapurV1A.0016s0650.3.p 612 AEKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKV 663
                             589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.632602683IPR003035RWP-RK domain
PfamPF020423.0E-25615663IPR003035RWP-RK domain
SuperFamilySSF542775.61E-24810901No hitNo description
PROSITE profilePS5174526.593817900IPR000270PB1 domain
SMARTSM006662.1E-26817900IPR000270PB1 domain
CDDcd064073.30E-37818897No hitNo description
Gene3DG3DSA:3.10.20.2401.5E-22818897No hitNo description
PfamPF005647.5E-19818899IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MEDGGLSTGT MLGATVDSGS FMDFDYMDEL LFEGCWLETT DGSVFLNPNQ SNSSAFFDSS  60
FLWPSPEINH GDSVSSPSQK SNQEDNQISM LPGNSPLSDI QARSLVGESA VYLAGWDENA  120
TDGSELGARW WIGPTPNPSP ETSVKRRLIM ALECIKDLTK NKDVLIQIWV PVNRGGRRVL  180
TTHDQPFSLD PNSERLASYR DISVKYQFSA EEDSKDSVGL PGRVFLGRVP EWTPDVRFFR  240
SDEYPRVNHA QLYDVRGTLA LPVFEQGSRT CLGVIEVVTT SQKIKYRPEL ESVCKALETV  300
DLRSSEVPTI QNLKACNMSY QAALPEIQKL LRAACETHRL PLAQTWVPCI QQGKGGCRHS  360
NENYHRCVST VDDACCVADF SIQGFQEACS EHHLLKGQGV AGQAFMTNEP CFSSDVTSYG  420
KTEYPLSHHA RMFGLCAAVA IRLRSMHTGT IDFVLEFFLP INCRDPQEQK TMLTSLSAII  480
QHVSQTLRVV TDEELLEETD LPVSDLLVPS DGRSSGEETS TVKESCSERH GRDNSPCTAC  540
FSEVQPSGSN ISLSQKEEQK VMLREKSSED RKNQEDYSLR ESIKCGRNST SAEGSFSSAN  600
TTKTGEKRRA KAEKTITLQV LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GINRWPSRKI  660
KKVDHSLKKL QRVISSVEVA SGSVQIDSFY KNFPELASPA FSRTSPLSTL KPSSHPEPSG  720
MQPEGNTFSP HDTAPKSHSP SCSLSSSSSH SCSSGAIAAS EDPLPGENSG NGVLKMVQSN  780
AELHASIPGE QEMMPRSQSH KTLEELGSIR LSQETDGHRL KVRYGNEIIR LRMPDKWGFR  840
DLLQEIVRRF NIDDIHRFDL KYLDDDSEWV LLTCDDDLEE CIDICGSSDN QIIKLLLEVS  900
PRPAGRSSHS SGLP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0016s0650.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451282.10.0protein NLP4
RefseqXP_024451283.10.0protein NLP4
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A2K2BBL20.0A0A2K2BBL2_POPTR; Uncharacterized protein
STRINGPOPTR_0005s27310.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein