PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0017s0940.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HD-ZIP
Protein Properties Length: 295aa    MW: 33162.2 Da    PI: 9.8428
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0017s0940.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox535.8e-17128184256
                             T--SS--HHHHHHHHHHHHHSSS--..HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   2 rkRttftkeqleeLeelFeknryps..aeereeLAkklgLterqVkvWFqNrRakek 56 
                             rk+ +++keq  +Lee F+++++++  ++er  LAk+l+L  rqV vWFqNrRa+ k
  SapurV1A.0017s0940.1.p 128 RKKLRLSKEQSLVLEETFKEHKTLNplQKERLALAKQLNLRPRQVEVWFQNRRARTK 184
                             788899*************9665551167788899********************98 PP
2HD-ZIP_I/II115.53.2e-37128219191
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKve..lareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                             +kk+rlskeq+ +LEe+F+e+++L+p +K++  la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l+een+rL+kev+
  SapurV1A.0017s0940.1.p 128 RKKLRLSKEQSLVLEETFKEHKTLNPLQKERlaLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLTEENRRLQKEVQ 214
                             69************************999762268**************************************************** PP

             HD-ZIP_I/II  86 eLreel 91 
                             eLr +l
  SapurV1A.0017s0940.1.p 215 ELR-AL 219
                             **9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.1E-301102IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466898.55E-17120187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-16121189IPR009057Homeodomain-like
PROSITE profilePS5007116.925124186IPR001356Homeobox domain
SMARTSM003892.4E-14126190IPR001356Homeobox domain
CDDcd000863.11E-13128187No hitNo description
PfamPF000462.0E-14128184IPR001356Homeobox domain
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
SMARTSM003402.3E-25186229IPR003106Leucine zipper, homeobox-associated
PfamPF021832.3E-10186220IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGDKNDGLGL SLSLGYATQR NHHHQPSLKL NLMPLASQNK HEKTSWTNLF QSPDRTGDTR  60
LSQRRIDRNR VSAAVADHDD ETGVSSPNST LSSSSGKRSE REQIGEETEA ERASCSRESD  120
DEDGDASRKK LRLSKEQSLV LEETFKEHKT LNPLQKERLA LAKQLNLRPR QVEVWFQNRR  180
ARTKLKQTEV DCEYLKRYCE NLTEENRRLQ KEVQELRALK LSPQLYMHVN PPTTLTMCPS  240
CKRVVSSASS SSAAAVSSAL APIASTPRPQ RPVPINPWAA MPIHHRTFDA ASRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132SRKKLRL
2178186RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0017s0940.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136132e-35BT013613.1 Lycopersicon esculentum clone 132414F, mRNA sequence.
GenBankX912122e-35X91212.1 L.esculentum mRNA for HD-ZIP protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017320.11e-180PREDICTED: homeobox-leucine zipper protein ATHB-4-like isoform X1
SwissprotP466023e-96HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLB9GP511e-177B9GP51_POPTR; Uncharacterized protein
STRINGPOPTR_0002s13720.11e-178(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.15e-90homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]