PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0018s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 808aa    MW: 90814.7 Da    PI: 5.0148
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0018s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-09746799147
                             TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT....TTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg....kgRtlkqcksrwqky 47 
                             + +WT+ E+e+l+++v+++ ++    Wk I ++      +gRt+ ++k++w+++
  SapurV1A.0018s0030.1.p 746 KVPWTAHEEEILKEGVQKFASDgkyPWKDILEYGSsvfaNGRTAIDLKDKWRNL 799
                             579******************************99*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.101.4E-7458518IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.44E-8458519IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.538469518IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-6471516IPR001965Zinc finger, PHD-type
PROSITE patternPS013590472515IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5129410.313741804IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-11741804IPR009057Homeodomain-like
SuperFamilySSF466892.77E-11743801IPR009057Homeodomain-like
SMARTSM007171.6E-6745802IPR001005SANT/Myb domain
PfamPF002497.6E-6746799IPR001005SANT/Myb domain
CDDcd116609.00E-15747801No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MDDPSGSATT LAWLWVIEYL ASFPHIEHSI LRELIEAAPE IPDDFGKNTR EMVALRCLED  60
LFCRRDNGVA NDVTSKGLKV TFDLSESCED VLQSILQETS VSDLNRGGPE LLKWDIHPFI  120
MHKRACMPKC ALEKVKDAIL EGFHPYASLK EYSELVNAND RGNRITTDYG DDGAPVGRVD  180
GSDTDGQMKP PDESPIHLLL ENENAGEDNS HYRNSLHSER ERSGSASQNL AGDHEDQGCV  240
DHLQPQAKRF KEDALHDNLS VGQISTTPPQ HKDLLEDSFE MVVEDSENRD FHLAKESSQG  300
GLEGSRPVEN DHDEDVGIGR HGCSLDADNE FQHNQHEIAH NANIMPLSGD GLHQYSFVDE  360
INHAEPRKSN AAPSSGTSDK LFINGSKDNF DHSGRPKPSN SVSSNGFHRN TDADEREAGT  420
NLLYEEDESN ESDEYDHERV DVGLKKSQFL SSQYMSRHDS LAEVNWTDQN LCVKCGKDGQ  480
LLVCGAGSCS LVTHENCLVF SPHFDERGDF YCPFCAYSLA ISEYLEAKKK AYSARKELKL  540
FIETRQEYQS NKHAQRLHSK RHGSSRQNED EDLLNKFLDY ENLAGTKRIQ SNSRGQISEG  600
NDHQFQKGKR KKQGEPFASC IGFDSLCREE EPDVNVRTNH LSTVEKEGEE VVRENSSGTE  660
LDINQHQVSV DPNYCDGNQL CKEKENVSGS QRIDGRRRKA VCAISSDGGD ISGDEDDKSI  720
TTNYFIRFRK RERQYTPAMP QSRRKKVPWT AHEEEILKEG VQKFASDGKY PWKDILEYGS  780
SVFANGRTAI DLKDKWRNLC KSSPKSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1728745RKRERQYTPAMPQSRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0018s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443805.10.0uncharacterized protein LOC7484006 isoform X1
TrEMBLB9II560.0B9II56_POPTR; Uncharacterized protein
STRINGPOPTR_0016s05370.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-08MYB_related family protein