PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0018s0230.6.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 243aa MW: 26745 Da PI: 8.9905

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0018s0230.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.2e-08	192	218	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RR++iN+++ L+el+P + SapurV1A.0018s0230.6.p 192 SHSLAERARREKINQRMKLLQELVPGC 218 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.15E-8	186	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.38E-5	186	229	No hit	No description
PROSITE profile	PS50888	10.785	188	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-8	191	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-5	192	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MDLLTGTVAR SGPELDETGL DSLQFDEDIR HLITAPSENA NSFIALLELP ANQAVELLHS 60 DSGKKECPNV TFPSNTSLLE RAARFSVLNG GSNSTDSSSV PSDSSSKNLE KAAPVKSEPL 120 ETESYLDSSQ PLVSDPTVGN SAPNARACSK RKERGKKVKG ASKKRKNEVS KQEEEKLPYV 180 HVRARRGQAT DSHSLAERAR REKINQRMKL LQELVPGCNK HWFWMKLSTM CSSCNAKWRS 240 YQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	165	KRKERGKKVKGASKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0018s0230.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002322692.3	1e-122	transcription factor bHLH48
Refseq	XP_011033280.1	1e-122	PREDICTED: transcription factor bHLH48-like
Swissprot	Q3EAI1	3e-54	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A2K1XAZ2	1e-120	A0A2K1XAZ2_POPTR; Uncharacterized protein
STRING	POPTR_0016s05150.1	1e-123	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0018s0230.6.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]