PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0018s0610.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 218aa    MW: 22745.7 Da    PI: 9.729
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0018s0610.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-082348227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                            k +lC+ +     Ck+Gd+C+FaHg+
  SapurV1A.0018s0610.4.p 23 KSRLCKKYNSAEGCKFGDKCHFAHGE 48
                            679*********************96 PP
2zf-CCCH352.4e-11184208126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             ykt+lC++fa+ G C +G rC+FaHg
  SapurV1A.0018s0610.4.p 184 YKTKLCDNFAK-GSCTFGQRCHFAHG 208
                             9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.6E-131951IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-82052IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8262149IPR000571Zinc finger, CCCH-type
SMARTSM003560.012348IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-62348IPR000571Zinc finger, CCCH-type
SMARTSM003223.9E-1290160IPR004087K Homology domain
PROSITE profilePS5008414.50891155IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.1E-1692160IPR004088K Homology domain, type 1
SuperFamilySSF547911.75E-1492160IPR004088K Homology domain, type 1
CDDcd001051.99E-1593156No hitNo description
PfamPF000133.1E-1293157IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.6E-16181214IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-9182213IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-7183209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.014183210IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-9184208IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVNLGPTVTV PAVPNSSAPS AVKSRLCKKY NSAEGCKFGD KCHFAHGEWE LGKAFVPSHN  60
DPRAAGSVPG RLGGRVEPPP PAPATSFGVY ATTTRISVDA SLAGSIIGKG GVHSKQICRQ  120
TGTRLSIKEH ETNPNLKNIE LEGSLEQIAQ ASKMIEELVR VTSANAAAKT SGSYGGHANP  180
GSNYKTKLCD NFAKGSCTFG QRCHFAHGAA ELRKSSV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0018s0610.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033221.11e-147PREDICTED: zinc finger CCCH domain-containing protein 31
SwissprotQ69XQ37e-73C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2K1XAS01e-146A0A2K1XAS0_POPTR; Uncharacterized protein
STRINGPOPTR_0016s04690.11e-146(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-62C3H family protein