PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0019s0260.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 189aa MW: 20717.6 Da PI: 8.3366

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0019s0260.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	88.4	9e-28	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C+++C+l+ ++ p++q++++ +v+k+FG+ ++++++++p+++ + +++sl++eA r+ +Pv+Gavg++++ SapurV1A.0019s0260.1.p 2 SCNGCRVLRKGCSEECALRHCIewidnPQAQANATVFVAKFFGRGGLMSFISSVPKSQGPSLFRSLLFEAVGRTVNPVSGAVGLLWT 88 6************************************************************************************ PP DUF260 83 lqqqleqlkaelal 96 ++++++q+++ ++l SapurV1A.0019s0260.1.p 89 GNWHVCQKAVMTVL 102 *****9987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.662	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-23	2	98	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSCNGCRVLR KGCSEECALR HCIEWIDNPQ AQANATVFVA KFFGRGGLMS FISSVPKSQG 60 PSLFRSLLFE AVGRTVNPVS GAVGLLWTGN WHVCQKAVMT VLRRGTVEPR PEFDNASECG 120 SFRPPVDHVS SRPQPLKRKR ADLDLCFTYQ RADTPPEESE TTTLESGSGN NCRFHDGGGE 180 PKLLRLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0019s0260.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002313905.1	1e-112	LOB domain-containing protein 39 isoform X1
Swissprot	Q9SN23	9e-60	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	B9HMY4	1e-110	B9HMY4_POPTR; Uncharacterized protein
STRING	POPTR_0009s09270.1	1e-111	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	7e-62	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	SapurV1A.0019s0260.1.p