PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0019s0700.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 220aa    MW: 24717.2 Da    PI: 10.2359
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0019s0700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.31.5e-211764249
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            +i+ k   qvtfskRr+g++KKA+EL++LC++e+a+++fs+ +k + +
  SapurV1A.0019s0700.1.p 17 KISKKNHLQVTFSKRRAGLFKKASELCTLCGVEIAIVVFSPAQKAFSF 64
                            79999999*********************************9997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-32867IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-27887IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.563868IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-171030IPR002100Transcription factor, MADS-box
PfamPF003198.8E-241764IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-173045IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-174566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVNRKPSMGR QKIKIEKISK KNHLQVTFSK RRAGLFKKAS ELCTLCGVEI AIVVFSPAQK  60
AFSFGHPDVD SIMDRFLARN PPPQSSGTHQ LIEAHRNANV REHNMQLTQI LNQLEAEKRH  120
SETLNQMRKN SGSQCWWEAP IEELGLQELE QLRGALEELK RRVTKQTSKF LIESSNSLPF  180
LPVNGTGQIG NFETKPEISV APTPPHHANN FGNYGHGIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19894187MEF2C
5f28_B3e-19894187MEF2C
5f28_C3e-19894187MEF2C
5f28_D3e-19894187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0019s0700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005044.11e-137PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK27e-59AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2K1Z4W31e-134A0A2K1Z4W3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s08740.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-51AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]