PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0020s0460.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family STAT
Protein Properties Length: 709aa    MW: 79873.2 Da    PI: 5.3712
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0020s0460.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT197.71.1e-612223401119
                    STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikf 87 
                             ldvvllna+ q+v+k++e+vasL+yadsgl+vek++d+e+pLL+s+dG+ef+s+drp kll+Gras+klkisqLsskcdnrLfrik+
  SapurV1A.0020s0460.1.p 222 LDVVLLNAICQAVNKELEIVASLVYADSGLHVEKTSDDEDPLLASCDGIEFASYDRPGKLLHGRASLKLKISQLSSKCDNRLFRIKL 308
                             8************************************************************************************** PP

                    STAT  88 eipklkkypfleavskpirCisrsrntrsssl 119
                             eipk++ y+flea+s+pirCisr rn r+s +
  SapurV1A.0020s0460.1.p 309 EIPKFSGYHFLEAFSHPIRCISRCRNPRTSMT 340
                             **************************997654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2001.4E-613152IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498993.17E-616165IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF133851.6E-616165No hitNo description
Gene3DG3DSA:3.30.505.102.1E-6601678IPR000980SH2 domain
SuperFamilySSF555506.45E-8602670IPR000980SH2 domain
PROSITE profilePS500019.663608708IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MGSDDNNNNN VINRKDYILL KDFRKEIEVE NEKNFSISFW VYLINSSTAA FPATIIKQVC  60
SDISSNAPFL VLNEKKKMTL FPFLHAHKDT TNFSNSTSME IEFPLENWIH VGCEVVTDML  120
RLHINGEIVG EQPQSFSLDK SLNSNGLRKI TLAGAGVDDG LQGYIHLAEV LPLSFSIKDH  180
YVKDPPLRLS VDLSSTSEID EDSDSIWNIV GGKASCRRIF SLDVVLLNAI CQAVNKELEI  240
VASLVYADSG LHVEKTSDDE DPLLASCDGI EFASYDRPGK LLHGRASLKL KISQLSSKCD  300
NRLFRIKLEI PKFSGYHFLE AFSHPIRCIS RCRNPRTSMT WKRPSSAPDP SNKSQSFGLC  360
NGSLELQHNS IHEIRAGPSS KRIKLGKERT STLGQTDVAC YSDTRTTNQV ANAVETQLAR  420
EAENIEEADN SPSVSDSIEE RLSDFNIMSS SGYLISDVII FKYCLGGMTD RALLLKEVAT  480
SASEEDLFRL ANEVSLYSGC SHHRRQIVIA KRLIEEGTKV WNSISQNNRL IQWENGVFEI  540
EEQFMRITCS STRSFTEQDF ELLRRISGCG EYMAQENFEK IWRWLYPVAF TLTSDSINTI  600
WNSTSPKWIE GFITKEEAEL SLQGPRGLQE PGTFVLRFPT SRSWPHSDAG CLIVTYVGSD  660
YTIHHRLLSL DYIYSSCEES EMNGKSLEDM LFAEPELSRL GRIVRQRQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0020s0460.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080851e-176AC208085.1 Populus trichocarpa clone JGIACSB05-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455331.10.0SH2 domain-containing protein A
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A2K2CAA60.0A0A2K2CAA6_POPTR; Uncharacterized protein
STRINGPOPTR_0011s10360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67103036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]