PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0021s0310.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 265aa    MW: 30479.6 Da    PI: 9.1588
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0021s0310.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.4e-182370148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd ll++ v+++G g+W+++ar  g++R +k+c++rw +yl
  SapurV1A.0021s0310.1.p 23 KGPWTAEEDRLLIEHVRLHGYGRWNSVARLAGLKRNGKSCRLRWVNYL 70
                            79********************************************97 PP
2Myb_DNA-binding52.79.6e-1776120147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg  T+ E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  SapurV1A.0021s0310.1.p  76 RGQITPHEESIIVELHAMWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                             7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.49E-3022117IPR009057Homeodomain-like
PROSITE profilePS5129415.7322270IPR017930Myb domain
SMARTSM007173.5E-152272IPR001005SANT/Myb domain
PfamPF002491.3E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-232477IPR009057Homeodomain-like
CDDcd001674.31E-122570No hitNo description
PROSITE profilePS5129424.44371125IPR017930Myb domain
SMARTSM007171.1E-1475123IPR001005SANT/Myb domain
PfamPF002491.0E-1376120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2478124IPR009057Homeodomain-like
CDDcd001673.51E-1080121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSWGVVAAQV ARGGFTGEGC WRKGPWTAEE DRLLIEHVRL HGYGRWNSVA RLAGLKRNGK  60
SCRLRWVNYL RPDLKRGQIT PHEESIIVEL HAMWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKAKLSPD SSDKARARLL KRQQFQQQLQ RQQQQIQHQQ LLQLNQSDMK KIMSLLHDEN  180
EDKAPCTPQM ITQEMVPHAI YPTTAEEEHG LLYNMFNVNA AVPEASSDDI IWDGLWNLEE  240
FHGNPGVECA TSKASMHNLV SPFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-262312527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0021s0310.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311700.11e-139transcription factor MYB2
TrEMBLB9HKW31e-137B9HKW3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s17350.11e-138(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-80myb domain protein 305