PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0021s0930.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 285aa    MW: 32529.4 Da    PI: 5.2572
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0021s0930.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.3e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg+WT eEd++l+  v+++G  +W++ ++  g+ R++k+c++rw +yl
  SapurV1A.0021s0930.1.p 14 RGPWTVEEDQILKSHVQKYGHSNWRALPKQAGLQRCGKSCRLRWVNYL 61
                            89********************************************97 PP
2Myb_DNA-binding52.89e-1767112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++++eE+e +++++++lG++ W+ Ia++++ gRt++++k+ w+++l
  SapurV1A.0021s0930.1.p  67 RGNFSKEEEETIIKLHEMLGNR-WSVIASRLP-GRTDNEIKNVWHTHL 112
                             89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129416.156961IPR017930Myb domain
SuperFamilySSF466892.51E-3110108IPR009057Homeodomain-like
SMARTSM007172.6E-131363IPR001005SANT/Myb domain
PfamPF002493.2E-151461IPR001005SANT/Myb domain
CDDcd001677.13E-111661No hitNo description
PROSITE profilePS5129424.37962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.8E-2565116IPR009057Homeodomain-like
SMARTSM007171.8E-1466114IPR001005SANT/Myb domain
PfamPF002491.6E-1567112IPR001005SANT/Myb domain
CDDcd001673.05E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVRAPCCEKM GLKRGPWTVE EDQILKSHVQ KYGHSNWRAL PKQAGLQRCG KSCRLRWVNY  60
LRPDIKRGNF SKEEEETIIK LHEMLGNRWS VIASRLPGRT DNEIKNVWHT HLLKRVKQNG  120
ESKPEKHIRI PDCHLNDTEL SQPEGSTNPT LSGCKSMEYA QMSPQPSSSD RSSITDTSET  180
NSTDLIKVEN IDSSEIYPVI DEDFWSEPEM VENSGMPSSS FLDDLQFPFP SSDSTTDPAG  240
CYGYGPKVDD NMDFWYNLFI KSGGIEELPV QYLQRYNYVA DERI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0021s0930.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011029827.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLB9HKG60.0B9HKG6_POPTR; Uncharacterized protein
STRINGPOPTR_0008s16660.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.15e-75myb domain protein 14