PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0022s0560.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 475aa    MW: 50213 Da    PI: 8.4436
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0022s0560.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.6e-115174427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                              C++++rtG+C yG+rC+++H++
  SapurV1A.0022s0560.1.p 51 QDCMYYLRTGICGYGARCRYNHPR 74
                            68********************96 PP
2zf-CCCH41.32.5e-1396120327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                             ++lC++++rtGtCk+G++Ck++H++
  SapurV1A.0022s0560.1.p  96 QPLCQYYMRTGTCKFGASCKYHHPK 120
                             79*********************96 PP
3zf-CCCH35.61.6e-11140166127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +++++C ++ +tG+Ck+G++CkF+H++
  SapurV1A.0022s0560.1.p 140 PGERECTYYIKTGQCKFGATCKFHHPQ 166
                             5789*********************97 PP
4zf-CCCH26.41.2e-08302328127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +++++C+++ ++G Ck+ ++C+++H+p
  SapurV1A.0022s0560.1.p 302 PGQPECQYYIKNGDCKFRSSCRYHHPP 328
                             5789*********************97 PP
5zf-CCCH29.41.3e-09349371426
                             ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             + C ++ + G+Ck+G+ CkF+H+
  SapurV1A.0022s0560.1.p 349 PTCTHYTQRGQCKFGSACKFNHP 371
                             78********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.7E-64774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0144775IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-64976IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-95074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-55374IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-793120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.08993121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-694120IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-1196120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-598119IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.934139167IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042301328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483301329IPR000571Zinc finger, CCCH-type
PfamPF146080.59307327No hitNo description
SMARTSM003562.9E-5345372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633345373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-5349375IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7349371IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4351371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDRYGRAQEG SQPDPALEWT GSGPETGLEE GVWQLGLGEA ESEYPERPNE QDCMYYLRTG  60
ICGYGARCRY NHPRDRSAVL GPARVGGVEY PERVGQPLCQ YYMRTGTCKF GASCKYHHPK  120
QGGGSASPVL LNYYGYPLRP GERECTYYIK TGQCKFGATC KFHHPQPGNI QIPAQSPAPQ  180
IAPVPGPTLY PSVQSPSVPS SQQYGVMVAR PPLLPGSYVQ GPYGTVLLSP SVVPYPSWSP  240
YPAPGSPVAS PNTQPAVSSG SVYGMSPLSP SAPAYTGAFQ YTPPATGPSS STQKEHLFPE  300
RPGQPECQYY IKNGDCKFRS SCRYHHPPEL VAPNVVLSPI GLPLRPGAPT CTHYTQRGQC  360
KFGSACKFNH PIGTLSYSPS ASSLADMPVA PYLVGSSIGT LAPSSSSSDL RSKPVSGPGK  420
DSSSTRLSSS TSAPSGSVGS IFSKSGPAPH SNVQQSDWSS GPSTSSSSGT HSSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0022s0560.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826691e-152AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380188.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ6NPN31e-159C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLB9N5000.0B9N500_POPTR; Uncharacterized protein
STRINGcassava4.1_006608m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-136C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]