PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0022s0560.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 373aa    MW: 38782.5 Da    PI: 9.3373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0022s0560.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.5e-091181027
                            GGTS--TTTTT-SS-SSS CS
                 zf-CCCH 10 artGtCkyGdrCkFaHgp 27
                            +rtGtCk+G++Ck++H++
  SapurV1A.0022s0560.2.p  1 MRTGTCKFGASCKYHHPK 18
                            8***************96 PP
2zf-CCCH361.2e-113864127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                            +++++C ++ +tG+Ck+G++CkF+H++
  SapurV1A.0022s0560.2.p 38 PGERECTYYIKTGQCKFGATCKFHHPQ 64
                            5789*********************97 PP
3zf-CCCH26.89.2e-09200226127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +++++C+++ ++G Ck+ ++C+++H+p
  SapurV1A.0022s0560.2.p 200 PGQPECQYYIKNGDCKFRSSCRYHHPP 226
                             5789*********************97 PP
4zf-CCCH29.81e-09247269426
                             ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             + C ++ + G+Ck+G+ CkF+H+
  SapurV1A.0022s0560.2.p 247 PTCTHYTQRGQCKFGSACKFNHP 269
                             78********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006422.0E-6118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.62119IPR000571Zinc finger, CCCH-type
SMARTSM0035622118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9343765IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-43764IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-83964IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-64065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-44363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483199227IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042199226IPR000571Zinc finger, CCCH-type
PfamPF146080.44205225No hitNo description
PROSITE profilePS5010314.633243271IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5243270IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7247269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6247273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4249269IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MRTGTCKFGA SCKYHHPKQG GGSASPVLLN YYGYPLRPGE RECTYYIKTG QCKFGATCKF  60
HHPQPGNIQI PAQSPAPQIA PVPGPTLYPS VQSPSVPSSQ QYGVMVARPP LLPGSYVQGP  120
YGTVLLSPSV VPYPSWSPYP APGSPVASPN TQPAVSSGSV YGMSPLSPSA PAYTGAFQYT  180
PPATGPSSST QKEHLFPERP GQPECQYYIK NGDCKFRSSC RYHHPPELVA PNVVLSPIGL  240
PLRPGAPTCT HYTQRGQCKF GSACKFNHPI GTLSYSPSAS SLADMPVAPY LVGSSIGTLA  300
PSSSSSDLRS KPVSGPGKDS SSTRLSSSTS APSGSVGSIF SKSGPAPHSN VQQSDWSSGP  360
STSSSSGTHS SI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0022s0560.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826691e-152AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380188.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ84W911e-115C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLB9N5000.0B9N500_POPTR; Uncharacterized protein
STRINGcassava4.1_006608m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-92C3H family protein