PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0022s0560.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 269aa    MW: 27603.7 Da    PI: 9.1218
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0022s0560.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.46e-0996122127
                             --S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                             +++++C+++ ++G Ck+ ++C+++H+p
  SapurV1A.0022s0560.3.p  96 PGQPECQYYIKNGDCKFRSSCRYHHPP 122
                             5789*********************97 PP
2zf-CCCH30.46.6e-10143165426
                             ---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             + C ++ + G+Ck+G+ CkF+H+
  SapurV1A.0022s0560.3.p 143 PTCTHYTQRGQCKFGSACKFNHP 165
                             78********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.004295122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.48395123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-599123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633139167IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-7143165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6143169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5145165IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVARPPLLPG SYVQGPYGTV LLSPSVVPYP SWSPYPAPGS PVASPNTQPA VSSGSVYGMS  60
PLSPSAPAYT GAFQYTPPAT GPSSSTQKEH LFPERPGQPE CQYYIKNGDC KFRSSCRYHH  120
PPELVAPNVV LSPIGLPLRP GAPTCTHYTQ RGQCKFGSAC KFNHPIGTLS YSPSASSLAD  180
MPVAPYLVGS SIGTLAPSSS SSDLRSKPVS GPGKDSSSTR LSSSTSAPSG SVGSIFSKSG  240
PAPHSNVQQS DWSSGPSTSS SSGTHSSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0022s0560.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826691e-152AC182669.2 Populus trichocarpa clone Pop1-21I14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380188.11e-143zinc finger CCCH domain-containing protein 34
SwissprotQ84W916e-74C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLB9N5001e-141B9N500_POPTR; Uncharacterized protein
STRINGcassava4.1_006608m1e-116(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.28e-59C3H family protein