PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0022s0640.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YB
Protein Properties Length: 152aa    MW: 16691.4 Da    PI: 5.073
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0022s0640.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB163.72.5e-5119113397
                   NF-YB   3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                             eqdr+lPianv+rimk++lP n+kisk+aket+qec+sefisfvt+eas+kc+ e+rkt+ngdd++wa+  lGf+dy+ pl+ yl++
  SapurV1A.0022s0640.1.p  19 EQDRLLPIANVGRIMKQILPPNSKISKEAKETIQECASEFISFVTGEASEKCRTERRKTVNGDDVCWAMEALGFDDYAGPLRRYLQR 105
                             8************************************************************************************** PP

                   NF-YB  90 yrelegek 97 
                             yre+eg++
  SapurV1A.0022s0640.1.p 106 YRETEGDR 113
                             ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-5018135IPR009072Histone-fold
SuperFamilySSF471134.19E-3920129IPR009072Histone-fold
PfamPF008084.1E-262387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.5E-165169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.5E-167088No hitNo description
PRINTSPR006151.5E-1689107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MVDNGGAGAS GDDGGVKLEQ DRLLPIANVG RIMKQILPPN SKISKEAKET IQECASEFIS  60
FVTGEASEKC RTERRKTVNG DDVCWAMEAL GFDDYAGPLR RYLQRYRETE GDRANQEKHA  120
NTDNISIADQ EKDASVPSSS SSYRNNRGTR M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A2e-4119108897NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0022s0640.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008710.13e-94PREDICTED: nuclear transcription factor Y subunit B-5-like
SwissprotO822483e-53NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2K1ZLA21e-92A0A2K1ZLA2_POPTR; Uncharacterized protein
STRINGPOPTR_0008s22520.11e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.14e-55nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]