PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0024s0350.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 644aa    MW: 72599.7 Da    PI: 5.4637
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0024s0350.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.16.2e-35201482127
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyat.gkrknratksgyWka 85 
                              +Gf+F+P+ eel+ +yL +k +g+ +e    ++ev+++++ePwdLp k  ++  ++ewyfF++rd ky++ +k  nr+tk+gyWk 
  SapurV1A.0024s0350.1.p  20 KAGFKFQPSPEELIINYLVPKSRGRMVEG-VPMAEVNLCEHEPWDLPnKsILNLADQEWYFFCRRDLKYRKtSKLCNRKTKAGYWKL 105
                             68***********************9888.56**************95444555899************963667899********* PP

                     NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                             t k+k+++++ + +++g+ ktL+fy+  +pk ++t W++ e+ 
  SapurV1A.0024s0350.1.p 106 TCKKKPIMAEhTMKNIGVMKTLTFYRTARPKDVRTGWMIYEFD 148
                             ********9866778**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-379168IPR003441NAC domain
PROSITE profilePS5100540.08619169IPR003441NAC domain
PfamPF023652.6E-1821148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MNCDFSSVMA NPISLMQLMK AGFKFQPSPE ELIINYLVPK SRGRMVEGVP MAEVNLCEHE  60
PWDLPNKSIL NLADQEWYFF CRRDLKYRKT SKLCNRKTKA GYWKLTCKKK PIMAEHTMKN  120
IGVMKTLTFY RTARPKDVRT GWMIYEFDIV TNSSLSKKGQ YVLCRLENKT DERIKKGEQN  180
HLMAPVSVSE AVPGQSIMTS DFENQNSSEM VVDLACGDRG LSHHEGSDFG SQNSSELIPA  240
RQVNELSHAM ASDFRNQSSY KLRSNLAFDG SGSCHSTDFN SETQYRNRPT VDSVFASKNH  300
YLAFDSENQN PNELLTVDSV YTVGENHYMD FDSEYQNPNE LLTVDSVYTV SKNHYQNPNE  360
LSAYTVSKNH YQNPNELLTV DSAYTVSKHH YQNPNELLTV DSAYTVSKNH CMAFDSEYQK  420
PNELLTFNSA YIVGKNHFDS HYPNPNALLT ADSAYDVSES QHMPFDSDNQ ILNNTKSTSA  480
CENSLMASHG FENTKLPFPP EGEYGTSLVI PCKFTNQSTY DKSEPSSLLA SGFTNQNLQK  540
EINSSAFDEG EWSFLTATTS DIRNQSPSRK ADISTHEKGY SSYLTAPFSE NNLADLALPE  600
ESLELLESWK LFLSKNTALT QHFSPVCVEG SHSCMDYSTS ACT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-251917215171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0024s0350.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826730.0AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301327.20.0NAC domain-containing protein 53 isoform X1
TrEMBLA0A2K2BJ930.0A0A2K2BJ93_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2821433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.22e-34NAC transcription factor-like 9