PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0024s0360.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 459aa    MW: 51745.5 Da    PI: 5.3698
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0024s0360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.52.1e-39181462127
                     NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                             p+GfrF+Pt eel+++yL++k++g+++e  + ++ev ++k+ePwdLp k  +k++++ewyfF++rd kya+ k  nr tk+gyW++t
  SapurV1A.0024s0360.1.p  18 PVGFRFRPTHEELISDYLEPKTRGDDVEDLRLMAEVILCKHEPWDLPgKsIIKSDDQEWYFFCPRDLKYASRKCYNRRTKAGYWQST 104
                             89************************999999***************7447788999****************************** PP

                     NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                              + k++++k +++++g++ktLvf+++  +kg++t+W++ ey 
  SapurV1A.0024s0360.1.p 105 CQAKPIKTKrTKKVIGIRKTLVFHEKVGKKGRRTRWIIYEYD 146
                             *******9967778***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-4212167IPR003441NAC domain
PROSITE profilePS5100543.36317167IPR003441NAC domain
PfamPF023657.4E-2318146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MTNPISSDQF QLFQLMKPVG FRFRPTHEEL ISDYLEPKTR GDDVEDLRLM AEVILCKHEP  60
WDLPGKSIIK SDDQEWYFFC PRDLKYASRK CYNRRTKAGY WQSTCQAKPI KTKRTKKVIG  120
IRKTLVFHEK VGKKGRRTRW IIYEYDNTTN SSQSNKGQYV LCKLMKKPDE KTKIGEQNHH  180
MTAVSGSDAE PGQSMASSFE NQDGSEMTVN SAFDASEPSH HVASDNSEAQ NSNQLMNNSA  240
RQGSVLNHYM TSDFRNQNAN KLQSNSAYAG SGSFHSISSN SETQIWNQQI VGSDYKGGKS  300
HYKASDSETQ ISNNTITMPP DENRLMAFEK WLMAPDLKNQ EPPSQPEGDR GPSVEIPCVF  360
INQSTNDCEP RSLMASRFRN QDVDDEIDIS AFDVGGWSCL AETPLDFVNQ NQKTDMSTLE  420
EGYSSTSTTC ISDNNLADAA LSDESLMTLE ELKKILEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-291216712165NO APICAL MERISTEM PROTEIN
1ut4_B5e-291216712165NO APICAL MERISTEM PROTEIN
1ut7_A5e-291216712165NO APICAL MERISTEM PROTEIN
1ut7_B5e-291216712165NO APICAL MERISTEM PROTEIN
4dul_A5e-291216712165NAC domain-containing protein 19
4dul_B5e-291216712165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0024s0360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023421.10.0PREDICTED: NAC domain-containing protein 86-like
TrEMBLB9GPV30.0B9GPV3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s15530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2821533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.24e-48NAC 014