PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0024s0790.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family LBD
Protein Properties Length: 212aa    MW: 22618.8 Da    PI: 7.7147
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0024s0790.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.41.4e-39111111100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                             +C aCk+lrrkC+k+C++apyf  +q +++fa+vhk+FGasn +kll ++p  +r+da+ +l yeA ar+rdPvyG+vg+i++lqqq
  SapurV1A.0024s0790.1.p  11 PCGACKFLRRKCVKGCIFAPYFDPDQgTAHFAAVHKVFGASNASKLLLRIPAPKRPDAVVTLSYEALARVRDPVYGCVGHIFALQQQ 97 
                             7*********************777769*********************************************************** PP

                  DUF260  87 leqlkaelallkee 100
                             + +l+aela+++++
  SapurV1A.0024s0790.1.p  98 VVNLQAELAYIQAH 111
                             *********99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.36710112IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-3811109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSAGASNGSG PCGACKFLRR KCVKGCIFAP YFDPDQGTAH FAAVHKVFGA SNASKLLLRI  60
PAPKRPDAVV TLSYEALARV RDPVYGCVGH IFALQQQVVN LQAELAYIQA HLPTLQCLPS  120
PQPPPLCPQS HSLASLSSSS EVPSFSKLAS NSNISMHFDE LQLQPQQAPT ESTGFCDPSE  180
NGIDNEDLHE LARAFVSRCL PGVRPRPPNS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-3681177116LOB family transfactor Ramosa2.1
5ly0_B6e-3681177116LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0024s0790.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017497.11e-120PREDICTED: LOB domain-containing protein 19-like isoform X1
SwissprotO813226e-71LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A2K2BIZ71e-118A0A2K2BIZ7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s06580.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.19e-60LOB domain-containing protein 31