PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0026s0330.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family STAT
Protein Properties Length: 632aa    MW: 71645.3 Da    PI: 5.9087
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0026s0330.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT188.76.6e-591462631118
                    STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikf 87 
                             ldvvllna+ q+++k++e+ asL+y d+gl+vek++d+e+pLL+s+dG+efs++drp kll+Gras+klkisqLsskc+nrLf+ik+
  SapurV1A.0026s0330.3.p 146 LDVVLLNAMRQAIDKELEIFASLIYVDNGLPVEKTSDDEDPLLTSCDGIEFSNYDRPGKLLHGRASLKLKISQLSSKCENRLFCIKI 232
                             8************************************************************************************** PP

                    STAT  88 eipklkkypfleavskpirCisrsrntrsss 118
                             eipk++ y+flea+s+pirCisrsrn r+s 
  SapurV1A.0026s0330.3.p 233 EIPKFSGYHFLEAFSHPIRCISRSRNPRTSL 263
                             **************************99764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd103383.48E-55521628No hitNo description
Gene3DG3DSA:3.30.505.101.1E-6526614IPR000980SH2 domain
SuperFamilySSF555504.05E-8529600IPR000980SH2 domain
PROSITE profilePS5000110.286532614IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MITLFPLLHE NKETTNSSNS ALMEIKFPLE NWIHVGFEVL TDILRLHING DIVSEQPQSS  60
SLDKNWNSNG PRKIALVGAC ADDGLQGYVY RAEVLPLSLS IKDHYVKDPP LWLSIDLSST  120
SEIDEGNDGI WNIVGGKASC RRVFSLDVVL LNAMRQAIDK ELEIFASLIY VDNGLPVEKT  180
SDDEDPLLTS CDGIEFSNYD RPGKLLHGRA SLKLKISQLS SKCENRLFCI KIEIPKFSGY  240
HFLEAFSHPI RCISRSRNPR TSLTWKRPTT VVEPFNKFQS FGLYNGSIEL QHNSIHEIRP  300
SPSSKRIKLG QEKTSAMEKP NVECYSDTWT TNQVENTPRI SLDMGVENVE EADNSSSVSD  360
SIEGRLSNFK ITSSSCYSIS DVTIFKYCLG GLIDKALLLK EVATSAAEQE LFRLANEVSL  420
YSGCSHHRRQ IVIAKRLIEE GTKIWNSISQ NNRLIQWEKV IFEIEEQFMR ITCSSTRSLT  480
EQDFELLRRI AGCREHMGQE NFEKMWRWLY PVIFTLASDP INTTWNSTSP KWIEGFITKE  540
EAELSLQGPR GLQEPGTFVL RFPTSRSWPH PDAGSLIVTY VGSDYTVHHR LLSLDYIYSC  600
EERGVNLKSL EQMLLAEPEL SRLGRIVRQS Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0026s0330.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080851e-121AC208085.1 Populus trichocarpa clone JGIACSB05-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024467295.10.0SH2 domain-containing protein A isoform X1
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A2K1YI630.0A0A2K1YI63_POPTR; Uncharacterized protein
STRINGPOPTR_0011s10360.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]