PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0027s0090.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 493aa MW: 54090.4 Da PI: 7.8387

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0027s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.5	3.3e-10	420	465	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P +k + a++L +Av++Ik+Lq SapurV1A.0027s0090.1.p 420 SIAERVRRTRISERMRKLQELFPDM----DKQTNTADMLDLAVDHIKNLQ 465 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.732	414	464	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-13	417	477	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.62E-10	418	469	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-12	419	477	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-10	420	470	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-7	420	465	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MLSKSGLIIA LYMQAHDLFF VFLRFVFSCS SSGLDLKEKF IFLGFYIPYI EGQATLKFKP 60 SLEGFSKEDM SLLYSSGFKS SDGELRKNQE FMDLNPYHYH QQQQQTQQNS SLMRYRSAPS 120 SFLEILGNGT SGHDGGGGGI GSGDYRYLRS SSPEMDTMLA RFMSSCNGSG DSSSQNLQEF 180 GERPAIKQEG EDSEMVYQSL PGHNLVTDNS VSAGNSMDSA FNVMRSMALE NSMQATKMST 240 ANGSNLARQN SSPAGLFSDL GVDNGFVVMR EGGSFRAGSG TNGEASPASK LRSHVNFSSG 300 QRILPHFAEI GEECIGGSSP EGNVNEARCM SRFTSDYWDD ASLSGLKRKR DNDGSMFSGL 360 NTLDNQDGNS GNRVTGLTHH LSLPKTVSEM ATIDKFLDFQ GNSVPCKIRA KRGFATHPRS 420 IAERVRRTRI SERMRKLQEL FPDMDKQTNT ADMLDLAVDH IKNLQKQVKS LTDTKAKCTC 480 SSKQKRNSSP TA*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MLSKSGLIIA LYMQAHDLFF VFLRFVFSCS SSGLDLKEKF IFLGFYIPYI EGQATLKFKP  60
SLEGFSKEDM SLLYSSGFKS SDGELRKNQE FMDLNPYHYH QQQQQTQQNS SLMRYRSAPS  120
SFLEILGNGT SGHDGGGGGI GSGDYRYLRS SSPEMDTMLA RFMSSCNGSG DSSSQNLQEF  180
GERPAIKQEG EDSEMVYQSL PGHNLVTDNS VSAGNSMDSA FNVMRSMALE NSMQATKMST  240
ANGSNLARQN SSPAGLFSDL GVDNGFVVMR EGGSFRAGSG TNGEASPASK LRSHVNFSSG  300
QRILPHFAEI GEECIGGSSP EGNVNEARCM SRFTSDYWDD ASLSGLKRKR DNDGSMFSGL  360
NTLDNQDGNS GNRVTGLTHH LSLPKTVSEM ATIDKFLDFQ GNSVPCKIRA KRGFATHPRS  420
IAERVRRTRI SERMRKLQEL FPDMDKQTNT ADMLDLAVDH IKNLQKQVKS LTDTKAKCTC  480
SSKQKRNSSP TA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0027s0090.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024463708.1	0.0	transcription factor bHLH130 isoform X1
TrEMBL	A0A3N7FJ22	0.0	A0A3N7FJ22_POPTR; Uncharacterized protein
STRING	POPTR_0009s06910.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	4e-67	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0027s0090.1.p