PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0027s0330.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 119aa MW: 13918.9 Da PI: 11.4583

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0027s0330.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.8	1.9e-13	8	100	1	92
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvv 81 f k l s + +s+rl++p + ++ g++ + + ++d+ ++W++kl++r++ + v+++ W +Fvk++g ++gD vv SapurV1A.0027s0330.1.p 8 FTKLL--SPTDASHRLTIPMANLGDFefpTGQH--AINIEVTDTIAQQWTFKLSIRRNNNPnprPVFAGEWVRFVKEKGRRAGDRVV 90 67778..77888899*****99998775564..4578999*******994444444579****************** PP EEE-SSSEE.. CS B3 82 Fkldgrsefel 92 F++++ +++ + SapurV1A.0027s0330.1.p 91 FSRQEVEGG-M 100 7654433.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-15	2	98	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.62E-12	3	95	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.051	6	108	IPR003340	B3 DNA binding domain
CDD	cd10017	6.71E-11	7	108	No hit	No description
SMART	SM01019	0.0019	8	107	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-9	8	103	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MQQQRLRFTK LLSPTDASHR LTIPMANLGD FEFPTGQHAI NIEVTDTIAQ QWTFKLSIRR 60 NNNPNPRPVF AGEWVRFVKE KGRRAGDRVV FSRQEVEGGM QYRIRAERKI FKYWVNVQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0027s0330.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011028527.1	1e-58	PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBL	A0A2K2AYH5	6e-57	A0A2K2AYH5_POPTR; Uncharacterized protein
STRING	POPTR_0004s23010.1	1e-57	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11016	3	36

Link Out ? help Back to Top
Phytozome	SapurV1A.0027s0330.1.p