PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0027s0390.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 731aa    MW: 79454.4 Da    PI: 6.3294
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0027s0390.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06319339526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C++f++ G C+ Gd C +aHg
  SapurV1A.0027s0390.2.p 319 PCPDFRK-GACRLGDMCEYAHG 339
                             8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.207.5E-1837178IPR020683Ankyrin repeat-containing domain
SMARTSM0024817003868IPR002110Ankyrin repeat
SuperFamilySSF484033.58E-1643178IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-979152IPR020683Ankyrin repeat-containing domain
SMARTSM002481.5E-485115IPR002110Ankyrin repeat
PROSITE profilePS5029715.24785193IPR020683Ankyrin repeat-containing domain
CDDcd002044.95E-1487160No hitNo description
PROSITE profilePS5008810.179120155IPR002110Ankyrin repeat
SMARTSM002480.092120152IPR002110Ankyrin repeat
SMARTSM003561.1E-5314340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.652319341IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4319339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4347377IPR000571Zinc finger, CCCH-type
SMARTSM0035621349372IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MCSCPEKSAE SPSTPTPSTV ENTPISKEMI CLTVETEDSF SSLLELAANN DVEGFKRFIE  60
QDASSIKEAG FWYGRRKGSK QIVLDQRTPL MVAATYGSID VLKLILDHIK ADVNLPCGKV  120
KTTALHCATS GGSINAVDAV RLLLSEGADP NCLDGNGDRP GDVIIVPPNL QSMKVTLEEL  180
LSKSDSDVSL AERDFNGPVG VCILRVSVSK SSSSSPTLSS SSENGSPHSP SGLIYSPRAS  240
KFNNLPASSA PERKEYPIDP SLPDIKNSIY ATDEFRMFSF KVRPCSRAYS HDWTECPFVH  300
PGENARRRDP RKFHYSCVPC PDFRKGACRL GDMCEYAHGV FECWLHPAQY RTRLCKDGPS  360
CNRQVCFFAH APEELRPLYV STGSAIPSPR SSQSAASVMD MAAALSLLPG SPSSVSGLSP  420
TPFKQPMSPS ANGIFHSSMA WSQPNVPILH LPGSNLQSSR LRSSLNARDI PPADFNLLPD  480
FDSQQQNLND LTCFSESRNN SSSFSVPGRS KTLTPSNLEE LFAAEMSSPR YADQAAYLNQ  540
MQQQQSMLSP IITGVFSPKN VEHPLLQAVF GVGSPGRMSS RVMEPISPIG SRLSALAQRE  600
KQQQQLRSLS SRDLGSNNPM APVVGSPVNS WSKWGSPNGK VDWSVHGDEL GCLRRSSSFE  660
LGNKGEEPDL SWVQSLVKES PPEMLKERFP NPVSSTASPG VGLSSNSRID SALESWLEQM  720
QIDQQQELVV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17380GRRKGSKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0027s0390.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1451490.0EF145149.1 Populus trichocarpa clone WS01121_A14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314035.30.0zinc finger CCCH domain-containing protein 30
RefseqXP_024464240.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_024464241.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2K1Z3N70.0A0A2K1Z3N7_POPTR; Uncharacterized protein
STRINGPOPTR_0009s06580.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]