PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0027s0820.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GeBP
Protein Properties Length: 409aa    MW: 45467.9 Da    PI: 4.3127
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0027s0820.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573115.92.4e-36129225297
                  DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqk 87 
                             lfqrlw++eDei lLqG++++++k  ++ ++ d+  fy+++k++++++++k+qlveK+rrLKkK+++  +k+++gk++ f+++hdq 
  SapurV1A.0027s0820.1.p 129 LFQRLWTDEDEIELLQGFLEYTTKGTANHHHnDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVLNKINTGKDFCFKSPHDQA 215
                             79*******************77766655445******************************************************* PP

                  DUF573  88 ifelskkiWg 97 
                             +fe+s+kiW 
  SapurV1A.0027s0820.1.p 216 TFEISRKIWS 225
                             *********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-34130225IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MAAEQDDTVF DQDLEVDDED DDDQSSQSQN DDLEDDLEIE NDDTLPENDD VLSEELLEDD  60
DTSTSAAVTT ASIPSVTTVS TTAVTTSTTT VVATDSTLDE SKRQRVSPEA TVLLSQDSKK  120
PQFDDTRRLF QRLWTDEDEI ELLQGFLEYT TKGTANHHHN DTALFYDQIK SKLQLDFNKN  180
QLVEKLRRLK KKYRNVLNKI NTGKDFCFKS PHDQATFEIS RKIWSSTGKI AGFSNEDGNN  240
LDDDDGGNPN YNNHTVMMDG DVVVKIEDHK STPRSRKRSR SRSVGVKMEE NRVLNDGFVG  300
NETNVTGGGG GNGNVSSVIE ETVRSCLSPL FKELTSNMAG AGMGGVGRGV GRLAMNAMPL  360
SFGPGDAMMM DEKWRKQHIL ELEVYSKRLE LVQDQIRAQL DELRSMGD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276281KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0027s0820.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025503.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A2K2C3X30.0A0A2K2C3X3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s06130.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.26e-56DNA-binding storekeeper protein-related transcriptional regulator