PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0027s0860.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 175aa    MW: 20017.3 Da    PI: 10.293
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0027s0860.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.8e-28959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            k+ien   rqvtfskRr+g+lKKA+EL +LCdaevavi+fs+tgkl+e+ss
  SapurV1A.0027s0860.2.p  9 KKIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIVFSNTGKLFEFSS 59
                            68***********************************************96 PP
2K-box65.61.8e-22881691697
                   K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                                +e++ Lk+ei++Lq +q +l G+dL  LslkeLqqLe+qL+++l  +++kK++ll+eq+e+++ +ek++  en+aLr++
  SapurV1A.0027s0860.2.p  88 PDLREVDVLKEEISKLQVKQLRLSGKDLAGLSLKELQQLENQLNEGLLCVKEKKERLLMEQLEQSRVQEKRAMLENEALRRQ 169
                             55689***************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.212161IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-33275IPR002100Transcription factor, MADS-box
CDDcd002652.20E-41271No hitNo description
PRINTSPR004044.2E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.00886174IPR002487Transcription factor, K-box
PfamPF014861.5E-1690169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRGKIEIKK IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIVFSN TGKLFEFSSS  60
SMKRTLSRYS KLLNSPEQPK IEYNAEKPDL REVDVLKEEI SKLQVKQLRL SGKDLAGLSL  120
KELQQLENQL NEGLLCVKEK KERLLMEQLE QSRVQEKRAM LENEALRRQA RIVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22180179MEF2C
5f28_B2e-22180179MEF2C
5f28_C2e-22180179MEF2C
5f28_D2e-22180179MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0027s0860.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463778.11e-105agamous-like MADS-box protein AGL15 isoform X1
SwissprotQ392952e-67AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A2K1Z3C21e-103A0A2K1Z3C2_POPTR; Uncharacterized protein
STRINGPOPTR_0009s06060.11e-103(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-58AGAMOUS-like 15