PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0029s0640.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 262aa    MW: 28774.8 Da    PI: 8.5976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0029s0640.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.2e-1175122354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             ++h+e+ErrRR+riN  +++Lr  +P +     +K++Ka  L  ++  +k+L
  SapurV1A.0029s0640.1.p  75 KSHSEAERRRRERINAHLATLRGFVPCS----TEKMDKAKLLAAVISQVKEL 122
                             58*************************8....79********9999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.23472122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-1275124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-975122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1276124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-878128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.71E-4157225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MFDYGFNPNS SSGSGYMSTF DPFPRSLQGF SDVLQGRPMV SQTLVLDAEM GELVKAPARV  60
GKKGISETKA LAALKSHSEA ERRRRERINA HLATLRGFVP CSTEKMDKAK LLAAVISQVK  120
ELKRDALEAC KGHLIPTADD EVKVETYFDG TLYFKASICC DYRPELLSDI RKAVDSLPLK  180
MVNAEMSTLG SRLKNEFVFT NSRNKNSADD AEATQILTDS IHQALTSVLE KGIASPEYSP  240
RTTLPNKKRM VTFFDSSSSS S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0029s0640.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142841e-142AC214284.1 Populus trichocarpa clone POP076-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005482.11e-152PREDICTED: transcription factor bHLH106-like
TrEMBLB9H2J01e-146B9H2J0_POPTR; Uncharacterized protein
STRINGXP_002522566.11e-108(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-31bHLH family protein