PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0031s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family DBB
Protein Properties Length: 303aa    MW: 32842.8 Da    PI: 5.8119
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0031s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.2e-06447542
                zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                             C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  SapurV1A.0031s0010.1.p  4 QCNVCEAAEANVLCCADEAALCWTCDEKVHAAnklaskHQRVPL 47
                            7******99*********************66899999999986 PP
2zf-B_box27.75.7e-095390237
                zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                            +++kC+ ++e+   +fC +++ llC++C +++H    H
  SapurV1A.0031s0010.1.p 53 QMPKCDICQENAGFFFCLEDRALLCRKCDVAIHTAntH 90
                            799*******99999******************55553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.779147IPR000315B-box-type zinc finger
CDDcd000212.16E-7347No hitNo description
SMARTSM003364.4E-11447IPR000315B-box-type zinc finger
SuperFamilySSF578455.04E-54594No hitNo description
SMARTSM003368.1E-155299IPR000315B-box-type zinc finger
PROSITE profilePS501198.9445299IPR000315B-box-type zinc finger
PfamPF006431.8E-65390IPR000315B-box-type zinc finger
CDDcd000218.46E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MKIQCNVCEA AEANVLCCAD EAALCWTCDE KVHAANKLAS KHQRVPLSTS SPQMPKCDIC  60
QENAGFFFCL EDRALLCRKC DVAIHTANTH VSAHQRFLLT GVKVDLEPTD PGASSSLGKS  120
PSAEKKTLET KSHPVSRRGT LLPLANPCNQ VLPVNVGGVG DFGSAKLPYS GGSATSSISQ  180
WQIDEFLELP EFNQNYGYID NGSSKADSGK RGDSDISAIL MSTEEEVDDE ECLGQVPDSS  240
WAVPQIPSPP TASGLYWPKS FHNHSDTAIF VPDICCSAVQ NPHYCEQRGT VSKRQRQRQR  300
QL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292297KRQRQR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0031s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1827000.0AC182700.2 Populus trichocarpa clone Pop1-73H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044583.10.0PREDICTED: B-box zinc finger protein 22-like
RefseqXP_011044584.10.0PREDICTED: B-box zinc finger protein 22-like
SwissprotQ9SYM21e-102BBX22_ARATH; B-box zinc finger protein 22
TrEMBLB9I1Q40.0B9I1Q4_POPTR; Uncharacterized protein
STRINGPOPTR_0011s10670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-104light-regulated zinc finger protein 1