PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0031s0130.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 545aa    MW: 59547.4 Da    PI: 7.5964
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0031s0130.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.3e-32194251260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  SapurV1A.0031s0130.2.p 194 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSN-DGQITEIVYKGTHDHPK 251
                             8****************************************.***************85 PP
2WRKY104.46.1e-33359417159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK v+g+++prsYY+Ct agCpv+k ver+++dpk+v +tYeg+Hnhe
  SapurV1A.0031s0130.2.p 359 LDDGYRWRKYGQKLVRGNPNPRSYYKCTNAGCPVRKLVERASHDPKAVMTTYEGKHNHE 417
                             59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.848188252IPR003657WRKY domain
SuperFamilySSF1182905.23E-25192252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-27192252IPR003657WRKY domain
SMARTSM007743.9E-34193251IPR003657WRKY domain
PfamPF031069.0E-25194250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.3E-36344419IPR003657WRKY domain
SuperFamilySSF1182909.94E-29351419IPR003657WRKY domain
PROSITE profilePS5081136.977354419IPR003657WRKY domain
SMARTSM007743.3E-38359418IPR003657WRKY domain
PfamPF031066.7E-26360417IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MRALGHSGIM QLAYILIFYT LKSCLLDLLV LCLKNIFRLI PIVLASQVEP SPTTGTFTNP  60
QTVPGSLSST SYSATSVSST TVGERKSNCF EFRPHARSDM VSADMNHQQS AQCVEVQRQL  120
QSQSFASSPS VKGEMAVCTN ELTLSPPLHM ITSGSSAPAE VDSDELNQMG LSSSGLRASQ  180
SDHKTGSAPT MSSDDGYNWR KYGQKHVKGS EFPRSYYKCT HPNCEVKKLF ERSNDGQITE  240
IVYKGTHDHP KPQPSRRYAS GSVLFTQEER FDKFSSLPSQ DDKSPRVCGQ VSHAIEPDSA  300
PELSPGTTND DTGEGAEDDE DPFLKRRRLD AGGFDVTPVI KPIREPRVVV QTLSEIDILD  360
DGYRWRKYGQ KLVRGNPNPR SYYKCTNAGC PVRKLVERAS HDPKAVMTTY EGKHNHEVPT  420
AKTNSHDTAG PSAGNGTSRT RPDKNETISL HLGVGISSTS ENWSGDQRQA LHAELVGIEN  480
QSSGSSFRIV RASPIAAYYG VLNGGMNQYG SRQIPSEGRR IEIPPLSHSS YPYPQNVGSL  540
LSGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-34194419877Probable WRKY transcription factor 4
2lex_A5e-34194419877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1324328KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0031s0130.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2080470.0AC208047.1 Populus trichocarpa clone JGIACSB05-H10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011011134.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-169WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A3N7FR290.0A0A3N7FR29_POPTR; Uncharacterized protein
STRINGPOPTR_0001s37260.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-157WRKY family protein