PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0031s0360.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 111aa    MW: 12479.3 Da    PI: 7.8433
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0031s0360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.32.6e-115341445
                            HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding 14 davkqlGggtWktIartmgkgRtlkqcksrwq 45
                             +++ +G++ W++Iar ++ gR+++ +k++w+
  SapurV1A.0031s0360.1.p  5 YYHEIYGNK-WAKIARFLP-GRSDNAIKNYWN 34
                            5899*****.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.698141IPR017930Myb domain
SMARTSM007178.2E-4139IPR001005SANT/Myb domain
SuperFamilySSF466891.06E-10244IPR009057Homeodomain-like
CDDcd001671.31E-8337No hitNo description
Gene3DG3DSA:1.10.10.606.0E-14338IPR009057Homeodomain-like
PfamPF002497.4E-9634IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MTLTYYHEIY GNKWAKIARF LPGRSDNAIK NYWNCILKKN LDSNSLHGCT MDLFIVSSLN  60
SYSCDTELNC LKLKERQSFE KAAFVNENIE LRCSAETSAS LFGIVVAVVV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0031s0360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022739.14e-56PREDICTED: uncharacterized protein LOC105124416
RefseqXP_011022740.14e-56PREDICTED: uncharacterized protein LOC105124416
RefseqXP_011033774.14e-56PREDICTED: myb-related protein A-like
RefseqXP_011033775.14e-56PREDICTED: myb-related protein A-like
RefseqXP_011033776.14e-56PREDICTED: myb-related protein A-like
RefseqXP_011033777.14e-56PREDICTED: myb-related protein A-like
RefseqXP_011033778.14e-56PREDICTED: myb-related protein A-like
TrEMBLA0A3N7G6W92e-52A0A3N7G6W9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12390.12e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.22e-16Homeodomain-like protein