PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0032s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 204aa    MW: 23155 Da    PI: 8.1163
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0032s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.95.6e-32321342102
                             HHHHHHHHHC...........TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTT CS
            HSF_DNA-bind   2 Flkklyeile...........deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskek 77 
                             Fl+k+y++le           +++ k+++sw+++gn fvv+ + ef++  Lp++Fkh+nf+SF+RQLn+YgFkk+++++        
  SapurV1A.0032s0100.1.p  32 FLSKTYDLLEeggahgsgddhHPHGKKIVSWNADGNGFVVWSPAEFSELTLPRFFKHNNFSSFIRQLNTYGFKKTSTKQ-------- 110
                             9*********888777777766799**************************************************9988........ PP

                             SEEEEESXXXXXXXXXXXXXXXXXX CS
            HSF_DNA-bind  78 iweFkhksFkkgkkellekikrkks 102
                              weFkh+ F+kg++++l +i rkk 
  SapurV1A.0032s0100.1.p 111 -WEFKHDRFQKGRRHMLFEITRKKC 134
                             .*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-3425126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-3928132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-2530132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.2E-2832132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-88193IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-894106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAARFSQLDQ DTTSRSSSSS IKSPGTKCPA PFLSKTYDLL EEGGAHGSGD DHHPHGKKIV  60
SWNADGNGFV VWSPAEFSEL TLPRFFKHNN FSSFIRQLNT YGFKKTSTKQ WEFKHDRFQK  120
GRRHMLFEIT RKKCEPSMFP TYLKASSDQE NAAAAMEEAS GLMLMEENKN LRREKLELQI  180
QIAQFEDLET KLVDCLTQQH TGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B5e-16321324104Putative transcription factor
5d5x_B5e-16321324104Putative transcription factor
5d5x_E5e-16321324104Putative transcription factor
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0032s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006377347.11e-114heat stress transcription factor A-6b
TrEMBLU5FYD01e-113U5FYD0_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05130.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.12e-35heat shock transcription factor A1D