PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0032s0260.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 190aa    MW: 21172.8 Da    PI: 6.9486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0032s0260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-12967255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C......TTS-.STCHHHHHHHHHHHHHHH CS
                     HLH  2 rrahnerErrRRdriNsafeeLrellPk.as...kapskK.lsKaeiLekAveYIksLq 55
                            r+  + +Er+RR++++  +++L +l+P+ +s   ++ps+  ls  + L +A  YIk Lq
  SapurV1A.0032s0260.1.p  9 RTDRKTAERNRRNQMKALYSQLNSLVPHqNSrvsNPPSEPvLSLPDQLNEAASYIKRLQ 67
                            778899**********************666***9999999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.17E-5571No hitNo description
SuperFamilySSF474595.63E-11582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.115766IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-8967IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-11981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MENNPSSSRT DRKTAERNRR NQMKALYSQL NSLVPHQNSR VSNPPSEPVL SLPDQLNEAA  60
SYIKRLQTNL EKMKEKKDSL MGVERTNYAS MASCNGTTTG LRPPQIEVRE MGSTLEVVLI  120
TGLDSQFMFN ETIRVLHEEG AEIINASFSV VEDTVFHTIH SKVEDSAPSN GAARISQRLK  180
KFVQDDCAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0032s0260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438591.11e-119transcription factor bHLH162-like
SwissprotF4JIJ72e-46BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A3N7EG361e-117A0A3N7EG36_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05320.11e-117(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-49bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]