PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0032s0260.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 184aa    MW: 20591.2 Da    PI: 6.9486
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0032s0260.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11961255
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
                     HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                            r+  + +Er+RR++++  +++L +l+P+ +   + +  ls  + L +A  YIk Lq
  SapurV1A.0032s0260.2.p  9 RTDRKTAERNRRNQMKALYSQLNSLVPHqN---SREPvLSLPDQLNEAASYIKRLQ 61
                            778899**********************55...66667*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.48E-6565No hitNo description
PROSITE profilePS5088811.458760IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-12779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-8961IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-11975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00451366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MENNPSSSRT DRKTAERNRR NQMKALYSQL NSLVPHQNSR EPVLSLPDQL NEAASYIKRL  60
QTNLEKMKEK KDSLMGVERT NYASMASCNG TTTGLRPPQI EVREMGSTLE VVLITGLDSQ  120
FMFNETIRVL HEEGAEIINA SFSVVEDTVF HTIHSKVEDS APSNGAARIS QRLKKFVQDD  180
CAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0032s0260.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438591.11e-121transcription factor bHLH162-like
SwissprotF4JIJ71e-48BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A3N7EG361e-120A0A3N7EG36_POPTR; Uncharacterized protein
STRINGPOPTR_0011s05320.11e-120(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-51bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]