PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0032s0350.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Dof

Protein Properties

Length: 406aa MW: 44630.7 Da PI: 8.8217

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0032s0350.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.2e-39	49	109	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ SapurV1A.0032s0350.1.p 49 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 109 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.2E-33	51	107	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-28	52	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MLANCEKMVV ISSTTNEWPH NQLDEKSLMA STSKLMERPS QEVLSQTQQQ QALKCPRCDS 60 SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVKR PASAVEGASN 120 SVSSANPNPQ TPIDHISSTS NHINPLLYGL SSSNPSEMNL PFPGRFNSRM DSAVSGYHNL 180 QPQLNALALG FSSGIMSTND ANGFNPTKQI QDVVTSNSLL SSYSNLFGSS TTSTNTASPI 240 ASLLASSFNQ QNFTNGGIKE SKRAPNYFQN MTIPFEELQM NGNSESGIGI KGVKNDHDQN 300 RLNWNVPCQN QIEQVGFSDP SMYWSTTTSV GSWHDPANTS DLERISLNKG IRLVWKEITD 360 ERSLDQRDHV SSKISLLVLF SRLRNPICAE RNLGSSSLSS SSLSC*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MLANCEKMVV ISSTTNEWPH NQLDEKSLMA STSKLMERPS QEVLSQTQQQ QALKCPRCDS  60
SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVKR PASAVEGASN  120
SVSSANPNPQ TPIDHISSTS NHINPLLYGL SSSNPSEMNL PFPGRFNSRM DSAVSGYHNL  180
QPQLNALALG FSSGIMSTND ANGFNPTKQI QDVVTSNSLL SSYSNLFGSS TTSTNTASPI  240
ASLLASSFNQ QNFTNGGIKE SKRAPNYFQN MTIPFEELQM NGNSESGIGI KGVKNDHDQN  300
RLNWNVPCQN QIEQVGFSDP SMYWSTTTSV GSWHDPANTS DLERISLNKG IRLVWKEITD  360
ERSLDQRDHV SSKISLLVLF SRLRNPICAE RNLGSSSLSS SSLSC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0032s0350.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT164738	0.0	KT164738.1 Populus tomentosa clone Potom.011G26508 F-box family protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006377384.2	0.0	dof zinc finger protein DOF1.4
TrEMBL	A0A172CDG8	0.0	A0A172CDG8_POPTO; F-box family protein 1
TrEMBL	A0A2K2APX0	0.0	A0A2K2APX0_POPTR; Uncharacterized protein
STRING	POPTR_0011s05450.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	8e-39	Dof family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0032s0350.1.p