PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0032s0360.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 146aa    MW: 16246.9 Da    PI: 7.0748
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0032s0360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.33.5e-4161137278
                             -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             Cq+++C++dl++ak+yhrrhkvCe h+kap v v+g++qrfCqqCsrfh++sefD++k+sCrrrLa+hnerrrk++a
  SapurV1A.0032s0360.1.p  61 CQADNCTSDLTDAKRYHRRHKVCELHAKAPFVPVNGHQQRFCQQCSRFHDVSEFDDSKKSCRRRLAGHNERRRKSSA 137
                             **************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375754.2E-561145IPR017238Squamosa promoter-binding protein
PROSITE profilePS5114131.40258135IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.4E-3358122IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.36E-3859138IPR004333Transcription factor, SBP-box
PfamPF031105.4E-3261134IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
METSKAEGKR SLKEIEDEEE EEDDEDLAGG LGFVDDDKIK KKGKRGSNGG GGSSPMLMVS  60
CQADNCTSDL TDAKRYHRRH KVCELHAKAP FVPVNGHQQR FCQQCSRFHD VSEFDDSKKS  120
CRRRLAGHNE RRRKSSAECQ GEGSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3649134184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0032s0360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011043410.15e-70PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ387412e-43SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A2K1YFY85e-67A0A2K1YFY8_POPTR; Squamosa promoter-binding-like protein
STRINGXP_006467766.14e-58(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.22e-39squamosa promoter binding protein-like 4
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]