PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0033s0300.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

SBP

Protein Properties

Length: 363aa MW: 39898.6 Da PI: 9.798

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0033s0300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	212	289	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh+lsefD++krsCr+rLa+hn+rrrk+++ SapurV1A.0033s0300.1.p 212 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAATVFAAGLTQRFCQQCSRFHMLSEFDNGKRSCRKRLADHNRRRRKSHQ 289 6**************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.3E-34	206	274	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.812	210	287	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.45E-37	211	288	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.8E-30	213	286	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MKPPPPSFYL LFFFVSFAGK VKLARSIKLS ILSRGKKMLG YEWGNPSTIM LSGGDEQAAS 60 SQEVEDLNRQ ANIFDHYTTP SFSDNNLFPQ QTSSTLMFQN HPTATSSAHH NFNPLFDPRA 120 YGGSGAPSYS ANHPSLLSLD SIPAITSVAT ATPHFLVPKS EEISRSSDLI TPRIGLDLGG 180 RTYFSSVEDD FVNRLYRRSR PLDPGSSSNA LRCQAEGCNA DLTHAKHYHR RHKVCEFHSK 240 AATVFAAGLT QRFCQQCSRF HMLSEFDNGK RSCRKRLADH NRRRRKSHQV SQENQKSQLQ 300 NAANSSSEIL TMSPPDSGAH SISAATATVS PPRMSLDCFK LRAYQATASS STSSSSLFFS 360 SG*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MKPPPPSFYL LFFFVSFAGK VKLARSIKLS ILSRGKKMLG YEWGNPSTIM LSGGDEQAAS  60
SQEVEDLNRQ ANIFDHYTTP SFSDNNLFPQ QTSSTLMFQN HPTATSSAHH NFNPLFDPRA  120
YGGSGAPSYS ANHPSLLSLD SIPAITSVAT ATPHFLVPKS EEISRSSDLI TPRIGLDLGG  180
RTYFSSVEDD FVNRLYRRSR PLDPGSSSNA LRCQAEGCNA DLTHAKHYHR RHKVCEFHSK  240
AATVFAAGLT QRFCQQCSRF HMLSEFDNGK RSCRKRLADH NRRRRKSHQV SQENQKSQLQ  300
NAANSSSEIL TMSPPDSGAH SISAATATVS PPRMSLDCFK LRAYQATASS STSSSSLFFS  360
SG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-31	206	286	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0033s0300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017436.1	0.0	PREDICTED: squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	1e-75	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	B9GPA7	0.0	B9GPA7_POPTR; Uncharacterized protein
STRING	POPTR_0002s14320.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6801	33	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	5e-78	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	SapurV1A.0033s0300.1.p

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]