PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0033s0300.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

SBP

Protein Properties

Length: 262aa MW: 28916.5 Da PI: 8.9464

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0033s0300.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	75.2	1.1e-23	212	260	1	49
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrf SapurV1A.0033s0300.3.p 212 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAATVFAAGLTQRFCQQCSRF 260 6***********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.1E-25	206	260	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	20.572	210	261	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.53E-22	211	260	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.0E-17	213	260	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MKPPPPSFYL LFFFVSFAGK VKLARSIKLS ILSRGKKMLG YEWGNPSTIM LSGGDEQAAS 60 SQEVEDLNRQ ANIFDHYTTP SFSDNNLFPQ QTSSTLMFQN HPTATSSAHH NFNPLFDPRA 120 YGGSGAPSYS ANHPSLLSLD SIPAITSVAT ATPHFLVPKS EEISRSSDLI TPRIGLDLGG 180 RTYFSSVEDD FVNRLYRRSR PLDPGSSSNA LRCQAEGCNA DLTHAKHYHR RHKVCEFHSK 240 AATVFAAGLT QRFCQQCSRF F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	5e-20	209	260	2	53	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0033s0300.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017436.1	1e-145	PREDICTED: squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	4e-50	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	B9GPA7	1e-140	B9GPA7_POPTR; Uncharacterized protein
STRING	POPTR_0002s14320.1	1e-140	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.2	8e-54	squamosa promoter binding protein-like 8

Link Out ? help Back to Top
Phytozome	SapurV1A.0033s0300.3.p

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]